DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and Pcbp4

DIOPT Version :9

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_067542.3 Gene:Pcbp4 / 59092 MGIID:1890471 Length:403 Species:Mus musculus


Alignment Length:476 Identity:195/476 - (40%)
Similarity:265/476 - (55%) Gaps:95/476 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TSSSAGGASIKHEDP--SVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERI 68
            :||.||    ..|.|  |:|||:|::|.|||||||||||||.|.|.||:|.|:|.||:|||||||
Mouse     2 SSSDAG----LEEGPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERI 62

  Fly    69 VTVSGTTNAIFSAFTLITKKF-EEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEI 132
            .|::|:|.|:|.|.::|..|. |:.|:...:.|.|.:..:.:||::|||||||||||:|:|||||
Mouse    63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127

  Fly   133 RQTTGCSIQVASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPV 197
            |:|||..:|||.::||||||||||:||..:.|..|:.|||.|:|||||:||||||.|...: |.|
Mouse   128 RETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSL-GTV 191

  Fly   198 ILANGQAFTIQGNYAVPTQETCPVFPLALATGGLHAGISGLADPLLKGAHLQGAIPAHHHHLQQM 262
            :|:..|.|::||.|...|                                     ||....|||:
Mouse   192 LLSANQGFSVQGQYGAVT-------------------------------------PAEVTKLQQL 219

  Fly   263 PDVAKNPLASLAALGLAGMNPASTGGINHTANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEI 327
            ...|. |.||.:.  :.|::|::              |....|..|.||||||:||:.|:||:||
Mouse   220 SGHAV-PFASPSV--VPGLDPST--------------QTSSQEFLVPNDLIGCVIGRQGSKISEI 267

  Fly   328 RQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVELQKANLLEQAQSQQNGGAA 392
            ||:|||.|:|.|..|..|   :|.:||:|:|.|:|||||||...:|..|:.         :||  
Mouse   268 RQMSGAHIKIGNQAEGAG---ERHVTITGSPVSIALAQYLITACLETAKST---------SGG-- 318

  Fly   393 AAPGAAAAGVAAVTGAAAPTSATNGAITTVTLTSGTGVVGAGAA-------GAAGVANGANPAAN 450
             .||:|.|.:.  |..:.|.:|..        |:..|::|...|       |...|...|.|.|:
Mouse   319 -TPGSAPADLP--TPFSPPLTALP--------TAPPGLLGTPYAISLSNFIGLKPVPFLALPPAS 372

  Fly   451 GGGSNGTISATG-YASANGGQ 470
            .|...|..:.|. .|:|||.:
Mouse   373 PGPPPGLAAYTAKMAAANGSK 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 38/60 (63%)
PCBP_like_KH 109..172 CDD:239089 41/62 (66%)
KH-I 305..368 CDD:238053 36/62 (58%)
Pcbp4NP_067542.3 PCBP_like_KH 19..80 CDD:239089 38/60 (63%)
PCBP_like_KH 103..167 CDD:239089 41/63 (65%)
KH-I 243..305 CDD:238053 36/64 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831588
Domainoid 1 1.000 97 1.000 Domainoid score I7213
eggNOG 1 0.900 - - E1_KOG2190
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 328 1.000 Inparanoid score I2438
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52907
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001027
OrthoInspector 1 1.000 - - otm43000
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10288
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 1 1.000 - - X408
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.890

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