DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and pcbp2

DIOPT Version :10

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:XP_012812157.1 Gene:pcbp2 / 448044 XenbaseID:XB-GENE-5903797 Length:464 Species:Xenopus tropicalis


Alignment Length:179 Identity:30/179 - (16%)
Similarity:66/179 - (36%) Gaps:50/179 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 AKIVNSFISN-----HGTSLLKWLWSLSF--KTTTKTAVPTKSMVKFENGYSVETVL----DGSK 142
            |::.|..:|:     |.|:........||  :.|.:....|......||...:|.::    :|.|
 Frog     5 ARLRNGLLSSVRRYLHTTTAYNGAGGASFVHRDTPENNPDTPFEFTSENYKRIEAIIGNYPEGHK 69

  Fly   143 LGIEPYSIQVLS--------------NGELLILDSQNSNIYQISSSLSLYSRP-------RLVTG 186
            .|.   .|.||.              |....:|:.....:|::::..::::|.       ::.|.
 Frog    70 AGA---VIPVLDLAQRQHGWLPISAMNKVAEVLEMPAMRVYEVATFYTMFNRKPVGKYHVQICTT 131

  Fly   187 SPEGYPGHVDGRLRDARLNNPKGL--TVDDRGNIYVADTVNNAIRKISE 233
            :|             ..|.|...:  .::.:..|:|.:|.::.:..::|
 Frog   132 TP-------------CMLCNSDSILEAIEKKLGIHVGETTSDKLFTLTE 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 KH-I_PCBP_rpt1 26..92 CDD:411866 1/2 (50%)
KH-I_PCBP_rpt2 107..177 CDD:411806 16/89 (18%)
KH-I_PCBP_rpt3 301..371 CDD:411867
pcbp2XP_012812157.1 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 16/71 (23%)
KH-I_PCBP1_2_rpt2 92..169 CDD:411946 12/89 (13%)
KH-I_PCBP1_2_rpt3 272..347 CDD:411949
Blue background indicates that the domain is not in the aligned region.

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