DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mub and ps

DIOPT Version :9

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster


Alignment Length:538 Identity:118/538 - (21%)
Similarity:192/538 - (35%) Gaps:175/538 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--- 62
            :|:||.:....|.:..|        :::::.....|:||||.||.:...::::||::.:|..   
  Fly   259 IENNNNNHIHHGETTYH--------MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDF 315

  Fly    63 --SCPERIVTVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQI-----PIRLIVPASQCGS 120
              ...||:..::|:|.||......|..|..|.....|.:......|.     .::::||.|..|.
  Fly   316 YPGTTERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGM 380

  Fly   121 LIGKSGSKIKEIRQTTGCSIQVASEMLPNS-TERAVTLSGSAEQITQCIYQICLVMLESPPRGA- 183
            :|||.|:.||:|::.:|..:|::.:....| .||.:|:.|..|........|...::|.|..|. 
  Fly   381 IIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTC 445

  Fly   184 -TIPYRPKPQVTGPV----------------------------------------ILANGQAFTI 207
             .:.|   ..|:|||                                        :|.||....:
  Fly   446 LNVSY---ADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGINL 507

  Fly   208 QGNYAVPTQETCPVFPLALATGGLH--------------------AGISGLADPLLKG-----AH 247
            ..|...|.    |...||:||..|.                    |.:|.||...:.|     :|
  Fly   508 SINLGSPN----PAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSH 568

  Fly   248 LQGAIPAHHHHL----------QQMPDVAKNPLAS--LAALGLAGMN------------------ 282
            ..||    |..|          ||....|....||  ..|:|...:.                  
  Fly   569 TNGA----HSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQS 629

  Fly   283 --------------------PAST-----------------------GGINHTANPANRAQQQQH 304
                                ||:|                       ||::.:..|.:.:.:...
  Fly   630 QLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSK 694

  Fly   305 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLIN 369
            .:.|...:||.|:|..|..:.||:.:|||.::||.......|..:|.:||:|.|.::|.|||||.
  Fly   695 NVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIE 759

  Fly   370 MSVELQKANLLEQAQSQQ 387
                 ||.|..|..:::|
  Fly   760 -----QKINEEETKRARQ 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 16/65 (25%)
PCBP_like_KH 109..172 CDD:239089 19/63 (30%)
KH-I 305..368 CDD:238053 23/62 (37%)
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 17/72 (24%)
PCBP_like_KH 368..433 CDD:239089 19/64 (30%)
KH-I 696..759 CDD:238053 24/62 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439330
Domainoid 1 1.000 43 1.000 Domainoid score I3174
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10288
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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