DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and Nova2

DIOPT Version :10

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001025048.2 Gene:Nova2 / 384569 MGIID:104296 Length:492 Species:Mus musculus


Alignment Length:471 Identity:120/471 - (25%)
Similarity:183/471 - (38%) Gaps:144/471 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG-----SCPERIVTVSGTTNAIFSAFTLI 85
            :::::.....||||||.|:.:.:.::|:||.|.:|..     ...||:..|.||..|:.:..:.|
Mouse    35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFI 99

  Fly    86 TKKFEEWCSQFN--DVGKVGKTQIPI--------RLIVPASQCGSLIGKSGSKIKEIRQTTGCSI 140
            .:|..|......  :|..:.:.|..:        :||||.|..|.:|||.|:.:|.:.:.:|..:
Mouse   100 AEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 164

  Fly   141 QVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGA--TIPYRPKPQVTGPVILA 200
            |::.:  |   |..||.||:||..||:.:.:..|...:.|.|...:  .|.|   ..|.|||..:
Mouse   165 QLSQK--PEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISY---ANVAGPVANS 224

  Fly   201 NGQAFTIQGNYAVPTQETCPVFPLALATGGLHAGISGLADPL-LKGAHLQGAIPAHHHHLQQMP- 263
            |...    ..||.|..    |.|.|.|...  |..|||..|. |.|.   ||.||      .:| 
Mouse   225 NPTG----SPYASPAD----VLPAAAAASA--AAASGLLGPAGLAGV---GAFPA------ALPA 270

  Fly   264 ---------DVAKNPLASLA------ALGL-------------AGMNPASTGGINHTANPANRA- 299
                     ..|.|.|||..      :|||             ||.|||:....|..|:.|..| 
Mouse   271 FSGTDLLAISTALNTLASYGYNTNSLSLGLNSAAASGVLAAVAAGANPAAAAAANLLASYAGDAG 335

  Fly   300 ----------------------------------------------------------------- 299
                                                                             
Mouse   336 AGPGAGAAPPPPPPPGALGSFALAAAANGYLGAGAGGAAGAGGAPLVAAAAAAGAAGGFLTAEKL 400

  Fly   300 ----QQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 360
                .::..|:.|..:|:|.|:||||..:.|.::::||.|:||...|...|..:|.:||:|:|.:
Mouse   401 AAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAA 465

  Fly   361 VALAQYLINMSVELQK 376
            ...|||||:..|..::
Mouse   466 TQAAQYLISQRVTYEQ 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 KH-I_PCBP_rpt1 26..92 CDD:411866 20/70 (29%)
KH-I_PCBP_rpt2 107..177 CDD:411806 24/80 (30%)
KH-I_PCBP_rpt3 301..371 CDD:411867 27/69 (39%)
Nova2NP_001025048.2 Bipartite nuclear localization signal. /evidence=ECO:0000255 10..26
KH-I_NOVA_rpt1 33..104 CDD:411863 20/68 (29%)
KH-I_NOVA_rpt2 131..200 CDD:411864 24/70 (34%)
KH-I_NOVA_rpt3 409..477 CDD:411807 27/67 (40%)
Blue background indicates that the domain is not in the aligned region.

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