DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mub and pcbp2

DIOPT Version :10

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_957486.1 Gene:pcbp2 / 321844 ZFINID:ZDB-GENE-030131-563 Length:318 Species:Danio rerio


Alignment Length:350 Identity:175/350 - (50%)
Similarity:227/350 - (64%) Gaps:56/350 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSGTTNAIFSAFTLI 85
            :|||||||:|.|||||||||||||.|.:.||||||:||||:|:|||||:|::|.|.|||.||::|
Zfish    11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTTAIFKAFSMI 75

  Fly    86 TKKFEE-WCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPN 149
            .:|.|| ..|..::.....|..:.:|::||||||||||||.|.||||||::||..:|||.:||||
Zfish    76 IEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140

  Fly   150 STERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPVILANGQAFTIQGNYAVP 214
            |||||:|::|:...|.:|:.|||:|||||||:|.||||||||. ..|||.|.|||:.:||.:|:|
Zfish   141 STERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYRPKPS-GSPVIFAGGQAYAVQGQHAIP 204

  Fly   215 TQETCPVFPLALATGGLHAGISGLADPLLKGAHLQGAIPAHHHHLQQMPDVAKNPLASLAALGLA 279
            ..:...:..||                                 :||.|    .|||        
Zfish   205 QPDLTKLHQLA---------------------------------MQQSP----FPLA-------- 224

  Fly   280 GMNPASTGGINHTANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEERE 344
               |:|.|   .||.....||...||:|:.|||||||||:.|.||.||||:|||.|:|:|..|  
Zfish   225 ---PSSQG---FTAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-- 281

  Fly   345 GGNTDRTITISGNPDSVALAQYLIN 369
             |::||.:||:|:|.|::||:||||
Zfish   282 -GSSDRQVTITGSPASISLAEYLIN 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 KH-I_PCBP_rpt1 26..92 CDD:411866 46/66 (70%)
KH-I_PCBP_rpt2 107..177 CDD:411806 43/69 (62%)
KH-I_PCBP_rpt3 301..371 CDD:411867 39/68 (57%)
pcbp2NP_957486.1 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 48/68 (71%)
KH-I 93..171 CDD:469614 47/77 (61%)
KH-I_PCBP1_2_rpt3 237..312 CDD:411949 41/71 (58%)

Return to query results.
Submit another query.