DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and Imp

DIOPT Version :9

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster


Alignment Length:442 Identity:103/442 - (23%)
Similarity:186/442 - (42%) Gaps:93/442 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI----SDGSCPERIVTVSGTTNAIFSAFTLIT 86
            :|:::|.:.||:|||::|..:....::|.|::::    :.||. |:.:|:.|......:|...|.
  Fly   145 LRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSL-EKSITIYGNPENCTNACKRIL 208

  Fly    87 KKFEEWCSQFNDVGKVGK--TQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPN 149
            :..::.....|. |::..  ::|.::::...:..|.:|||||:.||.|.|.|...|.|:|....|
  Fly   209 EVMQQEAISTNK-GELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDIN 272

  Fly   150 S--TERAVTLSGSAEQITQCIYQICLVMLES--------PPRGATIP-YRPKPQVTGPVILANGQ 203
            |  .||.:|:.|..|.:::...||...:.:|        .|:....| ..|...::.|   .||.
  Fly   273 SFNLERIITVKGLIENMSRAENQISTKLRQSYENDLQAMAPQSLMFPGLHPMAMMSTP---GNGM 334

  Fly   204 AFTIQ------GNYAV---PTQETCPVFP--------LALATGGLHAGISGLADPLLKGAHLQGA 251
            .|...      .::|:   |.....||||        |.:....:.|.|.      .:|:|::..
  Fly   335 VFNTSMPFPSCQSFAMSKTPASVVPPVFPNDLQETTYLYIPNNAVGAIIG------TRGSHIRSI 393

  Fly   252 IPAHHHHLQQMPDVAKNPLASLAALGLAGMNPASTGGINHTANPANRAQQQQH------------ 304
            :...:..|:..|..|..||           :..:...:.....|..:.:.|..            
  Fly   394 MRFSNASLKIAPLDADKPL-----------DQQTERKVTIVGTPEGQWKAQYMIFEKMREEGFMC 447

  Fly   305 ---------EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISN--CEEREGGNTDRTITISGNP 358
                     |:.|::..:|.||||||..:.|:::::|::|::..  .....||:.:..:.|.|..
  Fly   448 GTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLF 512

  Fly   359 DSVALAQYLINMSV---------ELQKANLLEQAQSQQNGGAAAAPGAAAAG 401
            .||..||..|...:         :.||| ..||.|.||...|    |||::|
  Fly   513 YSVQSAQRRIRAMMLSTNPPPITKKQKA-AKEQLQQQQQSLA----GAASSG 559

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 16/63 (25%)
PCBP_like_KH 109..172 CDD:239089 22/64 (34%)
KH-I 305..368 CDD:238053 20/64 (31%)