DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and usp108

DIOPT Version :9

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_594545.2 Gene:usp108 / 2541487 PomBaseID:SPAC23D3.08 Length:337 Species:Schizosaccharomyces pombe


Alignment Length:388 Identity:83/388 - (21%)
Similarity:137/388 - (35%) Gaps:134/388 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 IRLIMQGKEV----------GSIIGKKGEI-VNRFREESGA-KINISDGSCPERIVTVSGTTNAI 78
            :||::..::|          ...|.|.|:: |..:...:.| ||.|...|       ||...::|
pombe    35 VRLVLTAQQVQEWNLLPQDIQQEILKNGQVRVETYSSSNTARKIFICTSS-------VSNLASSI 92

  Fly    79 FSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ--------- 134
            .:...::|...||..|            :.|.|.|     .|||  .|||:. |.|         
pombe    93 PALIKVVTPTKEEDAS------------LNINLAV-----SSLI--LGSKVL-IHQNLIPSLFSV 137

  Fly   135 TTGCSIQVASEMLPNSTERAVTLSGS---AEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGP 196
            :....:..::.:||.|:||.|||..:   |..:.:.:.:..|..:...||.:.:||.|.....  
pombe   138 SNSTKLLYSASLLPRSSERLVTLETNEIDASVVIETLLKYILSRISFIPRVSVVPYIPDAAYG-- 200

  Fly   197 VILANGQAFTIQGN-----------YAVPTQETCPVFPLALATGGLHAGISGLADPLLKG---AH 247
             |..:...|| |.|           |.:|        |:||.:.|      |..|||...   .|
pombe   201 -IYGSPSTFT-QFNHMSSMVTPENPYGIP--------PIALTSAG------GNPDPLRTTQVFPH 249

  Fly   248 LQGAIPAHHHHLQQMPDVAKNPLASLAALGLAGMNPASTGGINHTANPANRAQQQQHEMTVSNDL 312
            ...:||                           :|.|:|             |....:|:|.:.|
pombe   250 SGPSIP---------------------------LNIAAT-------------QVVSQKMSVPSSL 274

  Fly   313 IGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVELQ 375
            :..:......|:.||.|.:.|.|.:   ||.:..:.::.|::.|..::        |.|..:|
pombe   275 LDQLYHAMPHKLMEISQNTNANITV---EESDSNSNEKFISVVGTSEA--------NQSALMQ 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 15/71 (21%)
PCBP_like_KH 109..172 CDD:239089 20/74 (27%)
KH-I 305..368 CDD:238053 13/62 (21%)
usp108NP_594545.2 THOC2_N 16..>160 CDD:292752 36/151 (24%)
KH-I <288..327 CDD:238053 12/50 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2190
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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