DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and Pcbp1

DIOPT Version :10

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_035995.1 Gene:Pcbp1 / 23983 MGIID:1345635 Length:356 Species:Mus musculus


Alignment Length:379 Identity:174/379 - (45%)
Similarity:235/379 - (62%) Gaps:45/379 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSGTTNA 77
            |.:.....:|||||||:|.|||||||||||||.|.|.||||||:||||:|:|||||:|::|.|||
Mouse     3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNA 67

  Fly    78 IFSAFTLITKKFEEWC-SQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQ 141
            ||.||.:|..|.||.. |...:.....:..:.:||:|||:||||||||.|.||||||::||..:|
Mouse    68 IFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132

  Fly   142 VASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLES---PPRG--ATIPYRPKPQVTGPVILAN 201
            ||.:|||||||||:|::|..:.:|:|:.||||||||:   .|:|  .||||:|.| .:.|||.|.
Mouse   133 VAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMP-ASSPVICAG 196

  Fly   202 GQAFTIQGNYAVPTQETCPVFPLALATGGLHAGISGLADPLLKGAHLQGAIPAHHHHLQQMPDVA 266
            |             |:.|     :.|.|..|| ...|..|.|....:||     .|.:..: |:|
Mouse   197 G-------------QDRC-----SDAAGYPHA-THDLEGPPLDAYSIQG-----QHTISPL-DLA 236

  Fly   267 K-NPLASL--------AALGLAGMNPASTGGINHTANPANRAQQQQHEMTVSNDLIGCIIGKGGT 322
            | |.:|..        ...|.||::.:|.....:.|: .:.:.|..||:|:.|:|||||||:.|.
Mouse   237 KLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWAS-LDASTQTTHELTIPNNLIGCIIGRQGA 300

  Fly   323 KIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVELQK 376
            .|.||||:|||.|:|:|..|   |::.|.:||:|:..|::|||||||..:..:|
Mouse   301 NINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAASISLAQYLINARLSSEK 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 KH-I_PCBP_rpt1 26..92 CDD:411866 47/65 (72%)
KH-I_PCBP_rpt2 107..177 CDD:411806 44/69 (64%)
KH-I_PCBP_rpt3 301..371 CDD:411867 38/69 (55%)
Pcbp1NP_035995.1 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 50/68 (74%)
KH-I_PCBP1_2_rpt2 92..169 CDD:411946 45/76 (59%)
KH-I_PCBP1_2_rpt3 276..351 CDD:411949 38/77 (49%)

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