DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and nova1

DIOPT Version :9

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001096339.1 Gene:nova1 / 100124925 XenbaseID:XB-GENE-949963 Length:508 Species:Xenopus tropicalis


Alignment Length:478 Identity:120/478 - (25%)
Similarity:186/478 - (38%) Gaps:135/478 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG-----SCPERIVTVSGTTNAIFSAFTLI 85
            :::::.....||||||.|:.:.:.::|:||.|.:|..     ...||:..:.||..|:.:....|
 Frog    52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFI 116

  Fly    86 TKKFEEWCSQFNDVGKVGKTQ----------------------IP------------------IR 110
            .:|..|...      .|.||:                      :|                  ::
 Frog   117 A
EKIREMPQ------NVAKTEPVSILQPQTTVNPDRIKQTLSSLPPATKSSPSDPMTISRASQVK 175

  Fly   111 LIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQIC 172
            :|||.|..|.:|||.|:.:|.:.:.:|..:|::.:  |   |..||.||:||..||..:.:..|.
 Frog   176 IIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK--PDGINLQERVVTVSGEPEQNRKAVELIV 238

  Fly   173 LVMLESPPRGA--TIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQETCPVFPLALATGGL--HA 233
            ..:.|.|..|:  .|.|   ..|||||..:|..        ..|...|..|.|.|.|..||  ||
 Frog   239 QKIQEDPQSGSCLNISY---ANVTGPVANSNPT--------GSPYANTAEVLPTAAAAAGLLGHA 292

  Fly   234 GISGLA--DPLLKG--------------------------------AHLQGAIPAHHHHLQQMPD 264
            .::|:|  ..:|.|                                |...||:.|..........
 Frog   293 NLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAA 357

  Fly   265 VAKNPLASLA-----------------ALGLAGMNPASTGGINHTANP-----------ANRAQQ 301
            .|.|.||:.|                 |||......|:|.|....|:|           :....:
 Frog   358 AAANLLATYASEATAGGGTAAGAAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKSTDGSK 422

  Fly   302 QQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQY 366
            ...|:.|..:|:|.|:||||..:.|.::::||.|:||...|...|..:|.:||:|.|.:...|||
 Frog   423 DVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQY 487

  Fly   367 LINMSVELQKANLLEQAQSQQNG 389
            ||...|..::.  :..|..|:.|
 Frog   488 LITQRVTYEQG--VRAANPQKVG 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 17/64 (27%)
PCBP_like_KH 109..172 CDD:239089 22/65 (34%)
KH-I 305..368 CDD:238053 25/62 (40%)
nova1NP_001096339.1 PCBP_like_KH 51..117 CDD:239089 17/64 (27%)
PCBP_like_KH 173..238 CDD:239089 22/66 (33%)
KH-I 424..489 CDD:238053 25/64 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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