DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment P5CDh1 and Aldh1a1

DIOPT Version :10

Sequence 1:NP_649368.2 Gene:P5CDh1 / 40434 FlyBaseID:FBgn0037138 Length:574 Species:Drosophila melanogaster
Sequence 2:XP_038949786.1 Gene:Aldh1a1 / 24188 RGDID:2087 Length:520 Species:Rattus norvegicus


Alignment Length:492 Identity:140/492 - (28%)
Similarity:208/492 - (42%) Gaps:96/492 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 DKKLIEKAIKT---AVETQPKWDRVSIADRLKIWEKAADLM-------------------ATTYR 149
            ||..::||:|.   |.:....|..:..::|.::..|.||||                   |..|.
  Rat    75 DKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYL 139

  Fly   150 QDLN------------AATMLGQSKTAIQAEIDSAAELIDFIRMNAYFLKEVTKYQPISENIKVT 202
            .||.            |..:.||:       |.|..::..|           |:.:||       
  Rat   140 SDLGGSIKALKYCAGWADKIHGQT-------IPSDGDIFTF-----------TRREPI------- 179

  Fly   203 KNSLRYRGIDGFIAAVSPFNFTAIGGNLSYTPAL-MGNGVLWKPSDTAMLSNWIIFKIMREAGVP 266
                      |....:.|:||..:.......||| .||.|:.||::...|:...:..:::|||.|
  Rat   180 ----------GVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFP 234

  Fly   267 DGVVNFVPADGPVFGDTITASPHLAGINFTGSVPTFNRLWKQVGNNIDNYV---NFPRLTGECGG 328
            .||||.||..||..|..|::...:..:.||||.        |||..|....   |..|:|.|.||
  Rat   235 PGVVNIVPGYGPTAGAAISSHMDVDKVAFTGST--------QVGKLIKEAAGKSNLKRVTLELGG 291

  Fly   329 KNFHFIHASADVESVVTSTIRSAFEYCGQKCSACSRMYVPESLWPQIKEGLVCEAAKLKIGDVQD 393
            |:...:.|.||::..|.......|.:.||.|.|.||::|.||::.:.....|..|.|..:|:...
  Rat   292 KSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVRKSVERAKKYVLGNPLT 356

  Fly   394 FSSFTSAVIDDKAFKRITGYIEHAKKSPNLEILAGGTYSDSKGYFVNPTIVLSKDPKDRIMTEEI 458
            ........||.:...:|...||..||. ..::..||....:||:||.||:..:...:.||..|||
  Rat   357 QGINQGPQIDKEQHDKILDLIESGKKE-GAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEI 420

  Fly   459 FGPVLSIYVYKESDLLETMKLVHTSTKFALTGAVFGQDED---FVKCALQEFKMAAGNFYINDKS 520
            ||||..|..:|..|  :.:|..:.:| :.|...||.:|.|   .|..|||     ||..::|...
  Rat   421 FGPVQQIMKFKSID--DVIKRANNTT-YGLAAGVFTKDLDRAITVSSALQ-----AGVVWVNCYM 477

  Fly   521 TGSVVGQQPFGGGRMSGTNDKAGGPHYILRWTSPQSI 557
            ..|  .|.||||.:||| |.:..|.|.:..:|..:::
  Rat   478 ILS--AQCPFGGFKMSG-NGRELGEHGLYEYTELKTV 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
P5CDh1NP_649368.2 ALDH_F4-17_P5CDH 41..563 CDD:143441 140/492 (28%)
Aldh1a1XP_038949786.1 ALDH_F1AB_F2_RALDH1 34..514 CDD:143459 140/492 (28%)

Return to query results.
Submit another query.