DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment P5CDh1 and alh-2

DIOPT Version :9

Sequence 1:NP_001189159.1 Gene:P5CDh1 / 40434 FlyBaseID:FBgn0037138 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_503467.2 Gene:alh-2 / 187001 WormBaseID:WBGene00000108 Length:514 Species:Caenorhabditis elegans


Alignment Length:574 Identity:146/574 - (25%)
Similarity:228/574 - (39%) Gaps:127/574 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LQQSLLKSSTR-----CLGSVIPDLKLKDFP-------IANEPILGYLKDSKERKALE------- 60
            :..|||:|:.|     |.||.:|. .|.||.       |.||.:     |:|..|..|       
 Worm     1 MDSSLLRSAVRASVQACNGSGLPP-GLADFKPKYTSLFINNEFV-----DAKSGKTFEFVNPANG 59

  Fly    61 -QALKGTASSCEDIPIVIGGKEYKTPEVRYQVMPHDHQHKLASFYYADKKLIEKAIKTAVETQPK 124
             ...|....:.:|:.|.:                                   :|.|.|.:...:
 Worm    60 KLLAKVAEGNRDDVDIAV-----------------------------------EAAKKAFKIGSE 89

  Fly   125 WDRVSIADRLKIWEKAADLMATTYRQDLNAATMLGQSKTAIQA-EIDSAAELIDFIRMNAYFLKE 188
            |.|:..:.|..:..:.||||... |..|.:...|...|...:| .||....:..|.....|..|.
 Worm    90 WRRMDASHRGVLLNRLADLMERD-RVILASLESLDNGKPYKEAYNIDLPISIKTFRYYAGYADKN 153

  Fly   189 -------------VTKYQPISENIKVTKNSLRYRGIDGFIAAVSPFNFTAIGGNLSYTPAL-MGN 239
                         .|:::|:                 |....:.|:||..:.......||| |||
 Worm   154 HGKTIPVGGDYFTYTRHEPV-----------------GVCGQIIPWNFPLLMQAWKLAPALAMGN 201

  Fly   240 GVLWKPSDTAMLSNWIIFKIMREAGVPDGVVNFVPADGPVFGDTITASPHLAGINFTGSVPTFNR 304
            .|:.|.:....||...:..:::||..|:||||.:|..|...|:.|.:...:..:.||||......
 Worm   202 TVVMKVAVKTPLSALHVASLIKEAQFPEGVVNIIPGRGTDAGEAIASHMDVDKVAFTGSTEVGKT 266

  Fly   305 LWKQVGNNIDNYVNFPRLTGECGGKNFHFIHASADVESVVTSTIRSAFEYCGQKCSACSRMYVPE 369
            :.|....:     |..::|.|.|||:.:.:.|.||:|..|..:..:.|...||.|||.||.:|..
 Worm   267 IMKAAAES-----NVKKVTLELGGKSPNIVFADADLEEAVRQSHHALFFNQGQCCSAGSRTFVEG 326

  Fly   370 SLWPQIKEGLVCEAAKL----KIGDVQDFSSFTSAVIDDKAFKRITGYIEHAKKSPNLEILAGGT 430
            .::.:    .|.:|.:|    .|||..|.::.....||:...:.|..|||..||. ..:::.||.
 Worm   327 KIYDE----FVAKAKELVEKTVIGDPFDENTTQGPQIDESQVETIMKYIESGKKE-GAQLVTGGV 386

  Fly   431 YSDSKGYFVNPTIVLSKDPKDRIMTEEIFGPVLSIYVYKESDLLETMKLVHTSTKFALTGAVFGQ 495
            ....:||||.|||..:.:.:.:|..|||||||:.:..:   |.:|.:.....:|.:.|...|...
 Worm   387 KHGDQGYFVKPTIFANVNDQMKIAQEEIFGPVMIVIRF---DSMEELIEKANNTIYGLAAGVVTN 448

  Fly   496 DEDFVKCALQEFK-MAAGNFYIN-----DKSTGSVVGQQPFGGGRMSGTNDKAG 543
            |   :..|||... :.||:.::|     |.:.       ||||.:.||...:.|
 Worm   449 D---LNKALQVANTIRAGSVWVNCYDVFDPAA-------PFGGFKQSGIGRELG 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
P5CDh1NP_001189159.1 ALDH_F4-17_P5CDH 41..563 CDD:143441 134/536 (25%)
alh-2NP_503467.2 ALDH_F1-2_Ald2-like 34..507 CDD:143410 134/540 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1012
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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