DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nopp140 and dao-5

DIOPT Version :9

Sequence 1:NP_001262195.1 Gene:Nopp140 / 40433 FlyBaseID:FBgn0037137 Length:773 Species:Drosophila melanogaster
Sequence 2:NP_001021004.1 Gene:dao-5 / 266845 WormBaseID:WBGene00000931 Length:971 Species:Caenorhabditis elegans


Alignment Length:908 Identity:333/908 - (36%)
Similarity:413/908 - (45%) Gaps:306/908 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 KNLAKVFQQKTKAASVAKS---SPKLSEILQFYQTKSPKKIPAIKATAGDSSEDSDSDSESDAAP 82
            |..|...|:|.:::|.:.|   :.||:.:      |.|.:.||.|..|  ||.|||||   |..|
 Worm   105 KKSATPVQKKAESSSSSDSDAPAKKLTPV------KKPAQTPAQKKAA--SSSDSDSD---DEPP 158

  Fly    83 KKPATAPALT-------------------------NGKA-------------------VKKAASS 103
            ||   |||:|                         :||:                   .||||||
 Worm   159 KK---APAVTTKVAPKPMAKKQDTSDSDSDSEDSDDGKSKKANPVKVTPVANVLQKVVAKKAASS 220

  Fly   104 TSEDSDSEEEKKPAAKATPA----KAVGKKAKSSSEDSSSEEE-----APKKA------------ 147
            :|:.||  :|||||||.|||    |.|.|||:|||:.|..|::     ||.||            
 Worm   221 SSDSSD--DEKKPAAKPTPAKPTPKPVVKKAESSSDSSDDEKKPVAKPAPAKATPKPAAKKADSS 283

  Fly   148 -------APVKAPPAKAAP---AKKVESSSEDSSSEEEPAKPAVKATTTKVAP---AKKADSSSE 199
                   ||.|..||||||   |||.|||| |||.:|:  |||.|.|..|..|   ||||:|||:
 Worm   284 SDSSDDEAPAKKTPAKAAPKPVAKKAESSS-DSSDDEK--KPAAKPTPAKATPKPVAKKAESSSD 345

  Fly   200 ESSSDEETKPAAKPV-AKAAP---AKKAASSSEESDSDDEPAAKKPAVQPAAKPAPKAAASSSED 260
              |||:|.||.|||. |||.|   ||||.|||:.||.:.:||||....:...||..|.|.|||: 
 Worm   346 --SSDDEKKPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAAKPTPAKATPKPVAKKAESSSD- 407

  Fly   261 SSSEEEVKPAAK-SAAKLAP---AKKGASSSDDSSSEDEAPKKAATLAKPISKAAP---TKKADS 318
             ||::|.||.|| ::||..|   |||..||||  ||:||||.|     |..:||||   :|||:|
 Worm   408 -SSDDEKKPVAKPTSAKATPKPAAKKADSSSD--SSDDEAPAK-----KTPAKAAPKPASKKAES 464

  Fly   319 STEDSSSEDDAPKKVAPAKATPAKAIP---AKK-AASSDDSSSEEEAP-KKAAPANATPARAPPA 378
            |::  ||:|:.|    .||:||||..|   ||| |:||.|||.:|:.| .|..||||||  .|.|
 Worm   465 SSD--SSDDEKP----AAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPANATP--KPVA 521

  Fly   379 KKAASSDDSSSEEEAP---------------KKA----------APAKATPAKATP---AKKAAS 415
            |||.||.|||.:|:.|               |||          ||||.|||||.|   :|||.|
 Worm   522 KKAESSSDSSDDEKKPVAKPTSAKATPKPAAKKADLSSDFSDDEAPAKKTPAKAAPKPASKKAES 586

  Fly   416 SDDSSSEEEAPKKAAAPAKATP---AKKAKSSSEDSDSDEE---------EAPKKPAAKAVAKAA 468
            |.| ||::|.|...:.|||.||   ||||.|||.||..||:         :|..|||||....::
 Worm   587 SSD-SSDDEKPAAKSTPAKTTPKPTAKKAASSSSDSSDDEKKPVAKPTSAKATPKPAAKKADSSS 650

  Fly   469 SSED-------------------------SDSSEDEK------PAKAAPKALAKSAKAASSD--- 499
            .|.|                         ||||:|||      |.|..||::.|.|.|:|||   
 Worm   651 DSSDDEAPAKKTPVKPTPVKIVAKKVDSSSDSSDDEKKPTKATPVKVTPKSVTKKAAASSSDSSD 715

  Fly   500 -----------------------SDDSSDEE-TPAVKPAVKKT-AAPAKKADSSSDESD------ 533
                                   ||||||:| .|..||..|.| ...|||||||.|.||      
 Worm   716 DEKKPVVKQTPNVVPKKEKAASSSDDSSDDEKKPTAKPTPKATPKQSAKKADSSDDSSDDEAPAK 780

  Fly   534 -------------------SGEESGE---VKPNSAT---NGNEKTAQKRKFS--GGDQDE----- 566
                               |.::|.:   .|..|||   ....|||.|:..|  ..|.||     
 Worm   781 KTPAKSTPAKTAVKKEASSSSDDSSDDEKTKKKSATTPAKSTPKTALKKAESSDSSDDDEDLPKP 845

  Fly   567 ---ATPNKKYNNFVKSGEQQKND-----------FTSTPNNTFSRNHNMNNSGGGSGRRSPFRRV 617
               .||..:..:..:|.|.:::.           .|||....:.....         :.||||||
 Worm   846 SKAVTPRPQRADSEESAETEESSSRTPALKAKPLATSTEKAVYENRKR---------KSSPFRRV 901

  Fly   618 R-TEDVVVDSRVQDMSFEAKENDFKKHNNGRGGRGGSGFSGRPDRSTWETNKFNGEGGGDGGG 679
            : |:|.|        |.:.:.|....|.:..|.|..... |:.....:...|...:.|..|||
 Worm   902 QMTKDSV--------SEKFRNNQHDSHFDQWGQRANESL-GKVVGKAFRHEKTKKKKGSYGGG 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nopp140NP_001262195.1 None
dao-5NP_001021004.1 tRNA-synt_1g <196..321 CDD:330949 53/129 (41%)
DNA_pol3_gamma3 <262..457 CDD:331207 100/208 (48%)
DNA_pol3_gamma3 <389..606 CDD:331207 108/234 (46%)
Atrophin-1 <445..886 CDD:331285 160/454 (35%)
SRP40_C 897..>945 CDD:309939 14/56 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004782
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23216
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1974
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.130

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