DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nopp140 and cec-8

DIOPT Version :9

Sequence 1:NP_001262195.1 Gene:Nopp140 / 40433 FlyBaseID:FBgn0037137 Length:773 Species:Drosophila melanogaster
Sequence 2:NP_497198.1 Gene:cec-8 / 175202 WormBaseID:WBGene00021913 Length:679 Species:Caenorhabditis elegans


Alignment Length:578 Identity:176/578 - (30%)
Similarity:271/578 - (46%) Gaps:101/578 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KIADAIVLEYLQSKDKNLAKVFQQKTKAASVAKSSPKLSEILQFYQTKSPKKIPAIKATAGDSSE 70
            ::.||    |.:..|.:|:|....|....|..:.:...||..:..:.|||:|..:.|..|. |..
 Worm   160 ELLDA----YNEEHDIDLSKTVMNKPPKKSKHQDTSDDSEESEDEEEKSPRKRSSKKRRAA-SVS 219

  Fly    71 DSDSDSESDAAPKKPATAPALTNGKAVKKAASSTSEDSDSEEEKKPAAKATPAKAVGKKAKSSSE 135
            ||||||:||...||      ....|| |::....|.|.|||.|::        :...||:|.|.:
 Worm   220 DSDSDSDSDFDKKK------WKKNKA-KRSKRDDSSDDDSEMERR--------RKKSKKSKKSKK 269

  Fly   136 DSSSEEEAPKKAAPVKAPPAKAAPAKKVESSSEDSSSEEEPAKPAVKATTTKVAPAKKA--DSSS 198
            ...||:.  |:|..              :|||:|...||:|.|.:.|        :|||  ||||
 Worm   270 FKKSEKR--KRAVN--------------DSSSDDEDEEEKPEKRSKK--------SKKAVIDSSS 310

  Fly   199 EESSSDEETKPAAKPVAKAAPAKKAASSSEESDSDDEPAAKKPAVQPAAKPAPKAAASSSEDSSS 263
            |:...::.:|..:|...|.:..::.||.|||    :....||.:..|...|...|....||:||.
 Worm   311 EDEEEEKSSKKRSKKSKKESDEEQQASDSEE----EVVEVKKNSKSPKKTPKKTAVKEESEESSG 371

  Fly   264 EEE---VKPAAKSAAKLAPAKKGASSSDDSSSEDEAPKKAATLAKPISKAAPTKKADSSTEDSSS 325
            :||   ||  .|.::|:...|...||||:....:|:|||.....:..||.:..|: :|..|.|.:
 Worm   372 DEEEEVVK--KKKSSKINKRKAKESSSDEEEEVEESPKKKTKSPRKSSKKSAAKE-ESEEESSDN 433

  Fly   326 EDD-----APKK--VAPAKATPAKAIPAKKAASSDDSSSEEEAPKKAAPANATPAR--APPAKKA 381
            |::     :|||  .:|.|::...|...:....||:...|||..:.....:.||.:  ...|.|.
 Worm   434 EEEEEVDYSPKKKVKSPKKSSKKPAAKVESEEPSDNEEEEEEVEESPIKKDKTPRKYSRKSAAKV 498

  Fly   382 ASSDDSSSEEEAPKKAAPAK--ATPAKATPAKKAASSDDSSSE----EEAPKKAAAPAKATPAKK 440
            .|::.|.:|||...:.:|.|  .||.|:  :||:|:.::|.:|    ||:|||..:|.|::..:.
 Worm   499 ESTESSGNEEEEEVEESPKKKGKTPRKS--SKKSAAVEESDNEEEDVEESPKKRTSPRKSSKKRA 561

  Fly   441 AKSSSEDSDSDEEE---------------APKKPAAKAVAKAASSEDSDSSEDEKPAKAAPKALA 490
            ||..||:|..:|.|               :|:|||||     ..||:|..:|:|:..:.:||...
 Worm   562 AKEESEESSDNEVEEVEDSPKKNDKTLRKSPRKPAAK-----VESEESFGNEEEEEVEESPKKKG 621

  Fly   491 KSAK------AASSDSDDSSD--EETPAVKPAVKKTAAPAKKADSSSDESDSGEESGE 540
            |:.:      ||..:|::|||  ||..|.:.....|.:|.|.....||.|.|.:|..|
 Worm   622 KTPRKSSKKSAAKEESEESSDDEEEEQAEETNGSHTESPTKSKTDESDNSTSSDEDDE 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nopp140NP_001262195.1 None
cec-8NP_497198.1 CD_CEC-4_like 114..167 CDD:349317 3/10 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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