DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CycH and Ccnh

DIOPT Version :9

Sequence 1:NP_524207.1 Gene:CycH / 40429 FlyBaseID:FBgn0022936 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_443213.3 Gene:Ccnh / 84389 RGDID:69419 Length:323 Species:Rattus norvegicus


Alignment Length:309 Identity:144/309 - (46%)
Similarity:198/309 - (64%) Gaps:18/309 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYPVSSQKRSWTFANEGQLMEFRVEQNSKYIESHEEEAQGRDL--NEHFLTSAEERLLLKQYEIY 63
            ||..|||||.||||:|.||...|.:.|.|:  ..:..|.|:.|  :..||...||..|.|.||..
  Rat     1 MYHNSSQKRHWTFASEEQLARLRADANRKF--KCKAVANGKVLPNDPLFLEPHEEMTLCKYYEKR 63

  Fly    64 LFDFCRRFEPTMPKCVVGTAFHYFKRFYLNNSPMDYHPKEILATCVFVACKVEEFNVSINQFVNN 128
            |.:||..|:|.||:.|||||..||||||||||.|:|||:.|:.||.|:||||:|||||..|||.|
  Rat    64 LLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGN 128

  Fly   129 IKGD---RNKATDIVLSNELLLIGQLNYYLTIHNPFRPIEGFLIDIKTRSNM-QNPDRLRPHIDS 189
            ::..   :.||.:.:|..|||||.|||::|.:|||:||.||||||||||..| :||:.||...|.
  Rat   129 LRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIKTRYPMLENPEILRKTADD 193

  Fly   190 FIDSTYYSDACLLHTPSQIALAAVLHAASREQENLDSYVTD-LLFVSAREKLPGLIDAVRKIRIM 253
            |:.....:||.||:|||||||.|:|.:|||....::||::: |:....|..|..|:|.::.:|.:
  Rat   194 FLSRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNL 258

  Fly   254 VKQYQQPDREKVKAIEKKLDKCRNQANNPDSEL---YKERLRRLYTDED 299
            ||:|:.|..|:|..:::||::|.:      |:|   ...:.|:.|.|:|
  Rat   259 VKKYEPPRSEEVAILKQKLERCHS------SDLALNMVTKKRKGYEDDD 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycHNP_524207.1 ccl1 2..307 CDD:129660 143/308 (46%)
CYCLIN 63..>127 CDD:238003 41/63 (65%)
Cyclin_C_2 159..257 CDD:293504 47/99 (47%)
CcnhNP_443213.3 ccl1 2..308 CDD:129660 143/308 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 296..323 3/6 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343762
Domainoid 1 1.000 111 1.000 Domainoid score I6132
eggNOG 1 0.900 - - E1_COG5333
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H946
Inparanoid 1 1.050 250 1.000 Inparanoid score I3153
OMA 1 1.010 - - QHG56153
OrthoDB 1 1.010 - - D1469819at2759
OrthoFinder 1 1.000 - - FOG0005252
OrthoInspector 1 1.000 - - oto97053
orthoMCL 1 0.900 - - OOG6_102792
Panther 1 1.100 - - LDO PTHR10026
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3774
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.