Protein Alignment CycH and Ccnl2

DIOPT Version :9

• Sequence 1: NP_524207.1
• Gene: CycH / 40429
• FlyBaseID: FBgn0022936
• Length: 324
• Species: Drosophila melanogaster
• Sequence 2: XP_006239606.1
• Gene: Ccnl2 / 298686
• RGDID: 1309149
• Length: 521
• Species: Rattus norvegicus
• Alignment Length: 228
• Identity: 45/228 - (19%)
• Similarity: 95/228 - (41%)
• Gaps: 49/228 - (21%)

  Fly    75 MPKCVVGTAFHYFKRFYLNNSPMDYHPKEILATCVFVACKVEEFNVSINQFVN------NIKGDR 133
            :|:..:.|....|:||:...|.:.:..:.:...||.:|.|:||....|...:|      ::: ::
  Rat    92 LPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRHLR-EK 155

  Fly   134 NKATDIVLSNELL------------LIGQLNYYLTIHNPFRPIEGFLIDIKTRSNMQNPDRLRPH 186
            .|...:||..|.:            ::.:|.:.:.:.:|.:.|..:|..::...|.        |
  Rat   156 KKPVPLVLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQ--------H 212

  Fly   187 ID----SFIDSTYYSDACLLHTPSQIALAAVLHAASREQE----NLDSYVTDLLFVSAREKLPGL 243
            :.    ::::.:..:|..:...|..||.|.: :.|:|..|    |...:.  |||.:..|::.
  Rat   213 LVQTAWNYMNDSLRTDVFVRFQPESIACACI-YLAARTLEIPLPNRPHWF--LLFGATEEEIQ-- 272

  Fly   244 IDAVRKIRIMVKQYQQPDREKVKA--IEKKLDK 274
                   .|..|..|...|:||..  :|.:::|
  Rat   273 -------EICFKILQLYTRKKVDLTHLESEVEK 298

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CycH	NP_524207.1	ccl1	2..307	CDD:129660	45/228 (20%)
		CYCLIN	63..>127	CDD:238003	13/51 (25%)
		Cyclin_C_2	159..257	CDD:293504	20/105 (19%)
Ccnl2	XP_006239606.1	CYCLIN_CCNL2_rpt1	33..188	CDD:410293	19/96 (20%)
		CYCLIN_CCNL2_rpt2	193..315	CDD:410296	26/126 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5333
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810