DRSC/TRiP Functional Genomics Resources

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Protein Alignment eg and knrl

DIOPT Version :10

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_788552.1 Gene:knrl / 40285 FlyBaseID:FBgn0001323 Length:647 Species:Drosophila melanogaster


Alignment Length:453 Identity:154/453 - (33%)
Similarity:191/453 - (42%) Gaps:142/453 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNQLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAGCKHNGDCVINKKNRTACKACRLRK 65
            |||.|||||||||||||||||||||||||||:|||:::|:.||:||:|:||||||||||||||:|
  Fly    10 MNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLSSISDCKNNGECIINKKNRTACKACRLKK 74

  Fly    66 CLLVGMSKSGSRYGRRSNWFKIHCLLQEQQ-----------TTSGLGGGSSVGSGSGGGVSSASL 119
            ||:|||||||||||||||||||||||||||           .:...|||||.|||.|.|:.:.  
  Fly    75 CLMVGMSKSGSRYGRRSNWFKIHCLLQEQQQQAVAAMAAHHNSQQAGGGSSGGSGGGQGMPNG-- 137

  Fly   120 EQLARLQQASNQARQTYQDKTNPCIKSATATTSPRIEGAAVG----------------------- 161
                                    :|..:....|....||:|                       
  Fly   138 ------------------------VKGMSGVPPPAAAAAALGMLGHPGGYPGLYAVANAGGSSRS 178

  Fly   162 ------TGIGGG-----------ASPSFLQAAKLHHQRQLKLDSRLSNT------PSDSGASSAG 203
                  .|:.|.           ||||.......:....:::.|...|.      .|:||.||:|
  Fly   179 KEELMMLGLDGSVEYGSHKHPVVASPSVSSPDSHNSDSSVEVSSVRGNPLLHLGGKSNSGGSSSG 243

  Fly   204 -DPNEDGVTSVLGGQI--ATPSSTNATSLPKLDLRHP---NFPATSEPDADMQRQRHQELLEIFR 262
             |.:..|.....||.:  ..|........|.|.|..|   :.|....|              .|.
  Fly   244 ADGSHSGGGGGGGGGVTPGRPPQMRKDLSPFLPLPFPGLASMPVMPPP--------------AFL 294

  Fly   263 SHSEPLYSSFAP--FSH----LPP-------VLLAAGVPQLPIFKDQFKAELLFPTTS------- 307
            ..|..|:..:.|  :||    |.|       .:.||.|..|  |......:...|.||       
  Fly   295 PPSHLLFPGYHPALYSHHQGLLKPTPEQQQAAVAAAAVQHL--FNSSGAGQRFAPGTSPFANHQQ 357

  Fly   308 -SPELEEPIDLSFRSRADPASPMAHNSNSPSLSEPAAASHCLGESTNFVRKSTPLDLTLVRSQ 369
             ..|.::|        |...||..|.:|:..|:...||..        :.|...||..|...|
  Fly   358 HHKEEDQP--------APARSPSTHANNNHLLTNGGAADE--------LTKRFYLDAVLKSQQ 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:413390 71/83 (86%)
knrlNP_788552.1 NR_DBD_like 12..96 CDD:413390 71/83 (86%)

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