DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eg and knrl

DIOPT Version :9

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001303368.1 Gene:knrl / 40285 FlyBaseID:FBgn0001323 Length:647 Species:Drosophila melanogaster


Alignment Length:453 Identity:154/453 - (33%)
Similarity:191/453 - (42%) Gaps:142/453 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNQLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAGCKHNGDCVINKKNRTACKACRLRK 65
            |||.|||||||||||||||||||||||||||:|||:::|:.||:||:|:||||||||||||||:|
  Fly    10 MNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLSSISDCKNNGECIINKKNRTACKACRLKK 74

  Fly    66 CLLVGMSKSGSRYGRRSNWFKIHCLLQEQQ-----------TTSGLGGGSSVGSGSGGGVSSASL 119
            ||:|||||||||||||||||||||||||||           .:...|||||.|||.|.|:.:.  
  Fly    75 CLMVGMSKSGSRYGRRSNWFKIHCLLQEQQQQAVAAMAAHHNSQQAGGGSSGGSGGGQGMPNG-- 137

  Fly   120 EQLARLQQASNQARQTYQDKTNPCIKSATATTSPRIEGAAVG----------------------- 161
                                    :|..:....|....||:|                       
  Fly   138 ------------------------VKGMSGVPPPAAAAAALGMLGHPGGYPGLYAVANAGGSSRS 178

  Fly   162 ------TGIGGG-----------ASPSFLQAAKLHHQRQLKLDSRLSNT------PSDSGASSAG 203
                  .|:.|.           ||||.......:....:::.|...|.      .|:||.||:|
  Fly   179 KEELMMLGLDGSVEYGSHKHPVVASPSVSSPDSHNSDSSVEVSSVRGNPLLHLGGKSNSGGSSSG 243

  Fly   204 -DPNEDGVTSVLGGQI--ATPSSTNATSLPKLDLRHP---NFPATSEPDADMQRQRHQELLEIFR 262
             |.:..|.....||.:  ..|........|.|.|..|   :.|....|              .|.
  Fly   244 ADGSHSGGGGGGGGGVTPGRPPQMRKDLSPFLPLPFPGLASMPVMPPP--------------AFL 294

  Fly   263 SHSEPLYSSFAP--FSH----LPP-------VLLAAGVPQLPIFKDQFKAELLFPTTS------- 307
            ..|..|:..:.|  :||    |.|       .:.||.|..|  |......:...|.||       
  Fly   295 PPSHLLFPGYHPALYSHHQGLLKPTPEQQQAAVAAAAVQHL--FNSSGAGQRFAPGTSPFANHQQ 357

  Fly   308 -SPELEEPIDLSFRSRADPASPMAHNSNSPSLSEPAAASHCLGESTNFVRKSTPLDLTLVRSQ 369
             ..|.::|        |...||..|.:|:..|:...||..        :.|...||..|...|
  Fly   358 HHKEEDQP--------APARSPSTHANNNHLLTNGGAADE--------LTKRFYLDAVLKSQQ 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:295381 71/83 (86%)
knrlNP_001303368.1 NR_DBD_like 12..96 CDD:295381 71/83 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447453
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2AR2M
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1136195at2759
OrthoFinder 1 1.000 - - FOG0009962
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR48092
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.850

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