DRSC/TRiP Functional Genomics Resources

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Protein Alignment eg and nhr-17

DIOPT Version :10

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_510115.1 Gene:nhr-17 / 191719 WormBaseID:WBGene00003616 Length:396 Species:Caenorhabditis elegans


Alignment Length:167 Identity:49/167 - (29%)
Similarity:74/167 - (44%) Gaps:44/167 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QLCKVCGEPAAGFHFGAFTCEGCKSFF------GRTYNNIAAIAGCKHNGDCVINKKNRTACKAC 61
            :||.|||:.|:|.|:....|.|||:||      .|||:       ||:||||:|:|..|.:|:.|
 Worm    29 ELCSVCGDVASGIHYSVAACNGCKTFFRRVVLENRTYS-------CKNNGDCIIDKSMRCSCRHC 86

  Fly    62 RLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTTSGLGGGSSVGSGSGGGV------------ 114
            |.:||::.||.:......||          ::::..:||.|...........:            
 Worm    87 RYKKCIIAGMDRGELSMERR----------RKRKKLNGLEGSEESWETEDALINLLLYKETLYQK 141

  Fly   115 ---SSASL------EQLARLQQASNQARQTYQDKTNP 142
               |||.:      |.|...|.|.|....||.::.:|
 Worm   142 LLLSSAMMIHTSLREALDMTQIAFNDENHTYDERMDP 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:413390 35/89 (39%)
nhr-17NP_510115.1 NR_DBD_HNF4A 31..105 CDD:143518 32/80 (40%)
NR_LBD 182..360 CDD:132726
Blue background indicates that the domain is not in the aligned region.

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