DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eg and nhr-207

DIOPT Version :9

Sequence 1:NP_524206.1 Gene:eg / 40428 FlyBaseID:FBgn0000560 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_506035.1 Gene:nhr-207 / 187661 WormBaseID:WBGene00011098 Length:406 Species:Caenorhabditis elegans


Alignment Length:90 Identity:31/90 - (34%)
Similarity:41/90 - (45%) Gaps:23/90 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAG----CKHNGDCV----INKKNRTACKAC 61
            |::|..||.|:|:...:|.|||:||.||     .|.|    ||....|:    |.|.....|.:|
 Worm    36 CRICRNPAVGYHYDVASCNGCKAFFRRT-----VITGRLPNCKFGDKCLEDHKIPKPGTRLCGSC 95

  Fly    62 RLRKCLLVGM----------SKSGS 76
            |..||..:||          ||.|:
 Worm    96 RFSKCEQMGMNPMAIKSEIISKKGN 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egNP_524206.1 NR_DBD_like 3..87 CDD:295381 31/90 (34%)
nhr-207NP_506035.1 ZnF_C4 36..107 CDD:197701 28/75 (37%)
HOLI 212..374 CDD:214658
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2AR2M
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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