DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn1 and snta1

DIOPT Version :10

Sequence 1:NP_524205.2 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_001072684.1 Gene:snta1 / 780141 XenbaseID:XB-GENE-962569 Length:473 Species:Xenopus tropicalis


Alignment Length:489 Identity:174/489 - (35%)
Similarity:256/489 - (52%) Gaps:73/489 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 NNAGDGGGMDMCDVPDHVANQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKG 205
            |.|...||     ||:.:.|.:|.||::|.|..|||:||||||||:|||||||||:|:|||....
 Frog    51 NGAEPAGG-----VPESLINLRRTVRVLKQDAGGLGVSIKGGRENKMPILISKIFKGLAADLTGS 110

  Fly   206 LYVGDAILTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAF 270
            ||||||||:|||.:|.:||||:||:|||::|:.|.||||:::|::|||:.:.........||:. 
 Frog   111 LYVGDAILSVNGVDLSEATHDDAVQALKKTGKEVVLEVKYMKEISPYFKGSPPSGSPAAPLQKR- 174

  Fly   271 LCPLGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCILRAADS 335
                  |.|..||    ....|.:.|||::.:::|.....|.|.|..|:.|.||......||.|.
 Frog   175 ------GSPALPP----KEYKDGKSIPLKMCYVSRRFLPTDTEPRYLEICSADGRDVLFFRAKDE 229

  Fly   336 AEALVWFNALHSAMGTSTQRALAEANRALTNLIG-ELKHIGWLSKRMSGGGSSGSAGGGAASGGS 399
            ..|..||||:|    |:...........:..|:| ::|.:|||::::...|...           
 Frog   230 GTAQSWFNAIH----TNASALAPRVREDVKQLLGKDIKQMGWLTEQLPQDGKRN----------- 279

  Fly   400 GTSNSVVAGELVSPSGRSSSESSDESDKWLPIFVAVTEREFRIYESAPWSVEAWSRPLEIYALAT 464
                                           :...:||::..:|.|.|.|.|.:|:|...:.|..
 Frog   280 -------------------------------LLALLTEKDLLLYNSLPHSREGFSKPAYCHPLIA 313

  Fly   465 TRLAGAGNNSSLNGQQTTV-FCVRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVNYQREF 528
            |||..:|.:.|.....|.: |.:|.||.:||..:....||.|::|.|.|.||.|.|.|....:|.
 Frog   314 TRLVHSGPSKSSPLYDTELAFALRSGTQKGVETHLFSVETQRELATWTRVLVDGCHSAAELIKEV 378

  Fly   529 SFRCLFQGRQCQLVVHINRGFFLYDCGGFAPTTPTVATAKTQLWQFAFDKLKGSADDGARMLYLD 593
            :..|.:.|.:|.|.:||::||.|:        |......|...:...|:||:.|:|||.|:|||:
 Frog   379 TTACTWGGNECALSIHIDQGFTLF--------TEEPGLNKVIHFHQPFEKLRMSSDDGVRILYLE 435

  Fly   594 FGE-DGEIELDMECCPKPVVFVVHNCLSAKVHNI 626
            ||. :.|::||:..|||.:||::|:.|||||..:
 Frog   436 FGNPEAELQLDLHSCPKTIVFIIHSFLSAKVSRL 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_524205.2 PH-like 30..>61 CDD:473070
PDZ_syntrophin-like 163..245 CDD:467262 55/81 (68%)
PHsplit_syntrophin <293..351 CDD:269960 20/57 (35%)
snta1NP_001072684.1 PDZ_syntrophin-like 68..150 CDD:467262 55/81 (68%)
PHsplit_syntrophin <188..245 CDD:269960 21/60 (35%)
PH 262..369 CDD:459697 36/148 (24%)
Blue background indicates that the domain is not in the aligned region.

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