DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and grip2a

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:XP_017212845.1 Gene:grip2a / 568084 ZFINID:ZDB-GENE-081104-132 Length:1100 Species:Danio rerio


Alignment Length:544 Identity:118/544 - (21%)
Similarity:177/544 - (32%) Gaps:195/544 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 NNNNAGDGGGM-DMCDVPDHVANQKR---HVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMA 199
            :.:.|.|..|. :.|.    :|:::|   .|.:||.:.:.||::|.||.:......:|.:..|..
Zfish    64 SKDTASDSSGFTNRCS----LADEQRGVTTVELIKKEGSSLGLTISGGCDKEGKPRVSNLRPGGL 124

  Fly   200 ADQAKGLYVGDAILTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPY--FRKASIISEV 262
            |.::..|.|||.|.:|||..|....|||.:..||..|..|.|||::  |:.|:  ....|:||:.
Zfish   125 AARSDQLNVGDYIKSVNGINLSKLRHDEIISMLKNIGERVVLEVEY--ELPPFAPSNPCSVISKT 187

  Fly   263 ------------GWELQRAF-----------LCPLGPGVPTSPPAPKTTPRADTRYI-------- 296
                        |:.|:..|           :..:.||   .|...:.|.||..|.:        
Zfish   188 IEVCLEKEGNSFGFVLRGGFHEDWHKARPLVVTYVRPG---GPADREGTLRAGDRVLSVNGVAVN 249

  Fly   297 -------------------------------------PLQL---------------THLARN--- 306
                                                 |||:               |.|.||   
Zfish   250 RQKHADALTLIMQSSQEAFFLIEYDIMVMDSVQKSSGPLQVDIARSAGSVLGLSLSTSLYRNKQV 314

  Fly   307 --LKYIDP---ENRCFELHSPDGVHSCILRAADSAEALVWFNALHSAMGTSTQR-ALAEANRALT 365
              ::.|.|   .:||..||:.|     ||.|.|               |.||:. :|.||.:.|:
Zfish   315 ITIQKIKPASVADRCGALHAGD-----ILLAID---------------GMSTEHCSLMEAQQLLS 359

  Fly   366 NLIGELKHIGWLSKRMSGGGSSGSAGGGAASGGSGTSNSVVAGELVSPSGRSSSESSDESDKWLP 430
            : ..||..:..|....|                   |...|.   |..|.:...:||:.....||
Zfish   360 S-SSELTKLEILPSLHS-------------------SQDTVR---VQRSCQRQWDSSENYTNALP 401

  Fly   431 IFVAVTEREFRIYESAPWSVEAWSRPLEIYALATTRLAGAGNNSSLN----GQQTTV-------- 483
            .|           :..|   .|||:.....:..:.....:.|.|..:    |.|:..        
Zfish   402 AF-----------QKTP---SAWSQTTPTPSHRSVSSGVSANTSGFHSYNCGSQSAYPNTYPSST 452

  Fly   484 -----FCVRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVNYQREFSFRCLFQGRQCQLVV 543
                 ...||...:    ...|.:.|:...:.|.|.|....|.|:.:   |...|.:|...    
Zfish   453 LPSYPSSPRCSATK----RRHRRKEHKSSLSLASSTVGAGGQVVHLE---SAEVLLRGDPL---- 506

  Fly   544 HINRGFFLYDCGGFAPTTPTVATA 567
               .||.|...||...|.|..|.|
Zfish   507 ---TGFGLQLQGGVFATEPLSAPA 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622
PDZ_signaling 163..244 CDD:238492 30/83 (36%)
PHsplit_syntrophin <293..351 CDD:269960 19/125 (15%)
grip2aXP_017212845.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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