DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and PARD3

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_062565.2 Gene:PARD3 / 56288 HGNCID:16051 Length:1356 Species:Homo sapiens


Alignment Length:127 Identity:38/127 - (29%)
Similarity:57/127 - (44%) Gaps:17/127 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 SDNNGLGISIKGGR--ENR--MPILISKIFRGMAADQAKGLYVGDAILTVNGEELRDATHDEAVR 230
            |.:.|||:|:||.|  ||.  :.|.:..|..|.||.:...|.|.|.::.||||.|...|:.:|:.
Human   596 SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKTNQDAME 660

  Fly   231 ALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAFLCPLGPGVPTSPPAPKTTPRAD 292
            .|:||......:...::.:..  |:.|..:|:           ..||.|..|..|..|...|
Human   661 TLRRSMSTEGNKRGMIQLIVA--RRISKCNEL-----------KSPGSPPGPELPIETALDD 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622
PDZ_signaling 163..244 CDD:238492 28/77 (36%)
PHsplit_syntrophin <293..351 CDD:269960 38/127 (30%)
PARD3NP_062565.2 DUF3534 1..146 CDD:288873
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..100
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..262
PDZ_signaling 272..347 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 408..448
PDZ_signaling 465..544 CDD:238492
PDZ_signaling 588..681 CDD:238492 28/84 (33%)
Interaction with PRKCI and PRKCZ. /evidence=ECO:0000250|UniProtKB:Q9Z340 712..936
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 865..886
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 932..1025
Interaction with FRMD4A. /evidence=ECO:0000250|UniProtKB:Q99NH2 935..1356
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1129..1356
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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