DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and grip1

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:XP_009298419.1 Gene:grip1 / 558006 ZFINID:ZDB-GENE-041210-125 Length:1191 Species:Danio rerio


Alignment Length:442 Identity:86/442 - (19%)
Similarity:138/442 - (31%) Gaps:168/442 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 GSASNDNGDRDPCLNNNNNAGDGGGMDMCDVPDHVANQKRHVRIIK------SDNNG-------- 174
            ||.::..|..:  |.:...|.|...:|.|.:.|.|...::...::|      .||:|        
Zfish   628 GSVAHRTGTLE--LGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSGVLRAGSVD 690

  Fly   175 --------------------------------LGISIKGGRENRMPILISKIFRGMAADQAKGLY 207
                                            |||:|.|..|...||:||.:.:|..|::...::
Zfish   691 RNARVLLACVADEQETSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIH 755

  Fly   208 VGDAILTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAFLC 272
            :||.||.:|...|:.....||:..|:.:|..|.|::|...|:                       
Zfish   756 IGDRILAINSNSLKGKPLSEAIHLLQMAGESVTLKIKKQGEL----------------------- 797

  Fly   273 PLGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCILRAADSA- 336
                      |:||          |..:|....||..::.:.:  :......::|..:.:.||| 
Zfish   798 ----------PSPK----------PPSVTGRLNNLSDLEDDGQ--KAGKLSDIYSTTIPSVDSAV 840

  Fly   337 ---------------------------EALVWFNALHSAMGTSTQRALAEANRALTNLIGELKHI 374
                                       .:..|.||..|....|...:..:.|..|.:.     .|
Zfish   841 ESWDGSAIDATFSTQAPTGFQASGYSFHSHEWRNAKPSRGSLSPVNSSRQRNNILPDF-----GI 900

  Fly   375 G---WLSKRMSGGGSSGSAGGGAASGGSGTSNSVVAGELVSPS----GRSSSESSDESDKWLPIF 432
            |   |  .|.|..|:|....|                 |:|.|    |...:|...|.:.|..  
Zfish   901 GVDDW--DRPSASGASTLPTG-----------------LISDSRFTVGHDGTEPDQEENFWSQ-- 944

  Fly   433 VAVTERE-------FRIYESAPWSVEAWSRPLEIYALATTRLAGAGNNSSLN 477
             |:.:.|       .|..|..|      .|.|....||......:|::.|||
Zfish   945 -ALEDLETCGQSGILRELEDKP------DRLLNKRNLAILATIMSGSSLSLN 989

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622
PDZ_signaling 163..244 CDD:238492 28/126 (22%)
PHsplit_syntrophin <293..351 CDD:269960 12/85 (14%)
grip1XP_009298419.1 PDZ_signaling 79..159 CDD:238492
PDZ_signaling 178..261 CDD:238492
PDZ_signaling 276..359 CDD:238492
PDZ_signaling 490..578 CDD:238492
PDZ_signaling 591..675 CDD:238492 11/48 (23%)
PDZ_signaling 711..792 CDD:238492 24/80 (30%)
PDZ_signaling 1053..1133 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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