DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn1 and CG34375

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_001163693.1 Gene:CG34375 / 42715 FlyBaseID:FBgn0085404 Length:568 Species:Drosophila melanogaster


Alignment Length:160 Identity:31/160 - (19%)
Similarity:61/160 - (38%) Gaps:29/160 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 NNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVGDAILTVNGEELRDATHDEAVRALK--- 233
            |..||:::.....:..| .:|.:....:|::. |:.:||.:|.:||.::......|....|:   
  Fly    12 NGTLGLNLSRAPWDPYP-WVSGVQAKSSAERG-GVRLGDTLLELNGADVLGLKISELANRLQDHW 74

  Fly   234 RSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAFLCPLGPGVPTSPPAPKTTPRADTRYIPL 298
            :||                   |.:::.:.|. |:|.:.|.......|........:...:....
  Fly    75 QSG-------------------AEVVTLMMWR-QQANIDPNEDPAEASHAVQHGINQQSLQKFAT 119

  Fly   299 QLTHLARNLKYIDPENRCFELHSPDGVHSC 328
            .|.|:::.|:.  |.  |.|:..|.|...|
  Fly   120 CLQHISQLLEC--PV--CLEVIKPPGWQCC 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622
PDZ_signaling 163..244 CDD:238492 16/74 (22%)
PHsplit_syntrophin <293..351 CDD:269960 9/36 (25%)
CG34375NP_001163693.1 PDZ 13..86 CDD:238080 16/93 (17%)
RING 129..168 CDD:238093 6/21 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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