DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn1 and Sntb1

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_001124014.1 Gene:Sntb1 / 299940 RGDID:1307728 Length:539 Species:Rattus norvegicus


Alignment Length:613 Identity:231/613 - (37%)
Similarity:329/613 - (53%) Gaps:106/613 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SPSG------LRCGNMETRVRGAWYRVLVTLETDFLAVSLDESCEAAQPSNDGQSTTLNGTLGSN 83
            :|:|      .|.|.:|..||..|::|||.|..|.|.:    |||....:.:|..||.||:... 
  Rat    12 APAGGGGARAQRSGLLEVLVRDRWHKVLVNLSEDALVL----SCEEGATAYNGIGTTTNGSFCR- 71

  Fly    84 HSGGGGGGAGGGGTGGGGQNGTLPNSA-SLQGMNIQDTELDGSASNDNGDRDPCLNNNNNAGDGG 147
                 |.|.|..|||       :|.:. |..|:....|:|..                       
  Rat    72 -----GSGTGHPGTG-------VPQAPDSPAGVRTAFTDLPE----------------------- 101

  Fly   148 GMDMCDVPDHVANQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVGDAI 212
                 .||:.::||||.|:::|.:..|||||||||:||:|||||||||:|:||||.:.|||||||
  Rat   102 -----QVPESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAI 161

  Fly   213 LTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAFLCPLGPG 277
            |:|||.:||||||||||:||||:|:.|.||||::||.|||.:|.|.:||:|||........||.|
  Rat   162 LSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIGWETPPPESPRLGSG 226

  Fly   278 VPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCILRAADSAEALVWF 342
            ......:...:...|.:.|||::.::.|::...|||||..|:||||..|:.:||:.|||.|..||
  Rat   227 SADPLSSQPFSFHRDRKSIPLKMCYVTRSMTLADPENRQLEIHSPDAKHTVVLRSKDSATAQAWF 291

  Fly   343 NALHSAMGTSTQRALAEANRAL--TNLIG--ELKHIGWLSKRMSGGGSSGSAGGGAASGGSGTSN 403
            :|:||.:|....|.:|:....|  |.:.|  |::|:|||::::.|                    
  Rat   292 SAIHSNVGDLLVRVVADIREQLGKTGIAGSREIRHLGWLAEKVPG-------------------- 336

  Fly   404 SVVAGELVSPSGRSSSESSDESDK-WLPIFVAVTEREFRIYESAPWSVEAWSRPLEIYALATTRL 467
                                ||:| |.|..|.:||::..||:|.|...|||..|:..|.|..|||
  Rat   337 --------------------ESEKQWKPALVVLTEKDLLIYDSMPRRKEAWLSPVHSYPLLATRL 381

  Fly   468 AGAG-NNSSLNGQQTTVFCVRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVNYQREFSFR 531
            ..:| ...|........|..|.||.:|:..:..|:|..||::.|.||:|||.|.:.....|.:..
  Rat   382 VHSGPGKGSPQAAMDLSFATRTGTKQGIETHLFRAEISRDLSHWTRSIVQGCHNSAELTAEITTA 446

  Fly   532 CLFQGRQCQLVVHINRGFFLYDCGGFAPTTPTVATAKTQLWQFAFDKLKGSADDGARMLYLDF-G 595
            |.::.::|:|.:|.:.||.:       .|.|........:.|..::|||.|:|||.||||||| |
  Rat   447 CTYRNQECRLTIHYDNGFSI-------STEPQDGAFPKTIIQSPYEKLKMSSDDGIRMLYLDFGG 504

  Fly   596 EDGEIELDMECCPKPVVFVVHNCLSAKV 623
            ::|||:||:..||||:||::|:.||||:
  Rat   505 KEGEIQLDLHSCPKPIVFIIHSFLSAKI 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622 12/30 (40%)
PDZ_signaling 163..244 CDD:238492 57/80 (71%)
PHsplit_syntrophin <293..351 CDD:269960 26/57 (46%)
Sntb1NP_001124014.1 PDZ_signaling 112..193 CDD:238492 57/80 (71%)
PH <239..296 CDD:278594 25/56 (45%)
PHsplit_syntrophin <243..300 CDD:269960 26/56 (46%)
PH 324..434 CDD:278594 43/149 (29%)
PH 324..434 CDD:214574 43/149 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337656
Domainoid 1 1.000 117 1.000 Domainoid score I5759
eggNOG 1 0.900 - - E1_KOG3551
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9618
Inparanoid 1 1.050 384 1.000 Inparanoid score I1963
OMA 1 1.010 - - QHG45230
OrthoDB 1 1.010 - - D1261897at2759
OrthoFinder 1 1.000 - - FOG0003604
OrthoInspector 1 1.000 - - otm45137
orthoMCL 1 0.900 - - OOG6_108779
Panther 1 1.100 - - LDO PTHR10554
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1403
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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