DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and X11L

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_001285376.1 Gene:X11L / 252671 FlyBaseID:FBgn0026313 Length:1170 Species:Drosophila melanogaster


Alignment Length:384 Identity:80/384 - (20%)
Similarity:113/384 - (29%) Gaps:125/384 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PPAAQQPIPQQHSPSPSGLRCGNMETRVRGAWYRVLVTLETDFLAVSLDESCEAAQPSNDGQSTT 75
            ||..|....||.....|.......:.:.|..|     .:.|        .|......|....|..
  Fly    17 PPHIQMNFGQQAQQQQSHQHQQQQQQQERYVW-----EMRT--------RSPNVTPASTVLNSPD 68

  Fly    76 LNGTL------GSNHSGGGGGGAGGGGTGGGGQNGT--------------------------LPN 108
            |||.|      |.:.||||..|:|..|:..|..:|:                          ||.
  Fly    69 LNGELSYVPLQGLSPSGGGVQGSGSYGSNAGRDSGSYYYQRPQLHQIRLGRSPGSQFETRDVLPQ 133

  Fly   109 SASLQGMNIQDTELDGSASNDN-----GDRDPCLNNNNNAGD--GGGMDMCDVPD-----HVANQ 161
            ..:..|......:.||....|.     .|.|....|..::|.  |...|:..|..     .:|..
  Fly   134 GLASPGSPTDVGKADGQCLRDGEIVVFDDIDTNWMNKASSGQRPGSNEDVLKVTKMIGQLPIAEY 198

  Fly   162 KRHVRIIKSDNNGLGISIKGGRE------NRMPILISKIFRGMAADQAKGLYVGDAILTVNGEEL 220
            :...|...|..|...|::.|.|:      .|:....|......||.:|.   ||:.|..|:.||.
  Fly   199 EGSPRRFGSQPNTNTITMGGPRKRPPGFPQRVSPTTSVANNATAAAKAS---VGNLIDLVDHEEE 260

  Fly   221 RDATHDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAFLCPLGPGVPTSPPAP 285
            |..|                     |||.||.|......||....|:..|               
  Fly   261 RSGT---------------------LREKTPTFDYLYEFSETRKVLEEFF--------------- 289

  Fly   286 KTTPRADTRY---------------------IPLQLTHLARNLKYIDPENRCFELH-SP 322
            |..|..:.||                     .|::..::.:.|..| |::..:.:| ||
  Fly   290 KANPEDEKRYTDYTTESGDDVASSQPQEYPATPMEQAYIGQRLARI-PKDELYMVHRSP 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622 3/30 (10%)
PDZ_signaling 163..244 CDD:238492 19/86 (22%)
PHsplit_syntrophin <293..351 CDD:269960 9/52 (17%)
X11LNP_001285376.1 PTB_X11 775..954 CDD:269919
PDZ_signaling 988..1065 CDD:238492
PDZ_signaling 1092..1151 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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