DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and sprt

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_610683.1 Gene:sprt / 246397 FlyBaseID:FBgn0082585 Length:634 Species:Drosophila melanogaster


Alignment Length:318 Identity:61/318 - (19%)
Similarity:85/318 - (26%) Gaps:128/318 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TPPAAQQPIPQQHSP------------SPSGLRCGNMETRVRGAWYRVLVTLETDFLAVSLDESC 62
            |.....:||...|..            :|.|  ||:      ...|.:..|.||:          
  Fly     3 TGSVVSEPISAHHRAFAKQKSASMTILNPKG--CGS------AVKYSLHSTAETN---------- 49

  Fly    63 EAAQPSNDGQSTTLNGTLGSNHSGGGGGGAGGGGTGGG-GQNGTLPNSASLQGMNIQDTELDGSA 126
                      ..|.:.|..|.|....|....||..||. ....|...|..|:.. :||.|    |
  Fly    50 ----------QETASTTTTSTHCSTTGRRRKGGSLGGTLSSRSTRSESKELRSA-LQDRE----A 99

  Fly   127 SNDNGDRDPCLNNNNNAGDGGGMDMCDVPDHVANQKRHVRIIKSDNNGLGISIKG---------- 181
            ...|.....||...... .|..:|..:.|  .|.||  :..:|::.....|.||.          
  Fly   100 VIQNLRIQLCLGKLPRP-TGPPLDESEKP--AAEQK--LNRLKTEAENKRIKIKNLKSALEKLDI 159

  Fly   182 -----------------GRENRMPILISKIFRGMAA----------------------------- 200
                             |||....:.|.:..|.:.|                             
  Fly   160 TDNIDIRIRQAELEYALGREELQMLSIVEEARALQARLEKSKPEAQTLYNIISSGVSLSLHAVHA 224

  Fly   201 -----------DQ----------AKGLYVGDAILTVNGEELRDATHDEAVRALKRSGR 237
                       ||          ..|||.||.||.:||..:...:.:|..:.:..||:
  Fly   225 TSGRWAVQQRTDQPGFYVEWALEGDGLYKGDRILEINGRLVTGKSKEELQKQVGNSGK 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622 6/30 (20%)
PDZ_signaling 163..244 CDD:238492 24/152 (16%)
PHsplit_syntrophin <293..351 CDD:269960
sprtNP_610683.1 PDZ <247..288 CDD:294084 12/36 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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