DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and PDZD2

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:XP_005248326.1 Gene:PDZD2 / 23037 HGNCID:18486 Length:2873 Species:Homo sapiens


Alignment Length:406 Identity:91/406 - (22%)
Similarity:157/406 - (38%) Gaps:108/406 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 QNGTLPNS-ASLQGMNIQDTELDGSASNDNGDRDPCLNNNNNA---GDGGGMDM----CDVPDHV 158
            :||  |:| ..:.|.:::.:|:|....:.....|..|..:|:.   ..||..|.    |...:.|
Human   267 ENG--PDSLKEVAGPHLERSEVDRGTEHRIPKTDAPLTTSNDKRRFSKGGKTDFQSSDCLAREEV 329

  Fly   159 ANQKRHVRIIK----SDNNGLGISIKGGR-ENRMP--ILISKIFRGMAADQAKGLYVGDAILTVN 216
            .      ||.|    .:::||||.:.||| ..|.|  |:::::..|.||.:...|.:||.:|.:|
Human   330 G------RIWKMELLKESDGLGIQVSGGRGSKRSPHAIVVTQVKEGGAAHRDGRLSLGDELLVIN 388

  Fly   217 GEELRDATHDEAVRALKRSGRVVDLEV---------------KFLREVTPYFRKASIISEVGW-- 264
            |..|...:|:|||..|:.:..:|.|.|               |.|.::|     :|:.....|  
Human   389 GHLLVGLSHEEAVAILRSATGMVQLVVASKENSAEDLLRLTSKSLPDLT-----SSVEDVSSWTD 448

  Fly   265 ----------------ELQRAFLCPLGPGVPTSPP-----APKT-----TPRADTRYIPL--QLT 301
                            .:|||.     ||  |..|     |.::     :|:..:..|.|  :|:
Human   449 NEDQEADGEEDEGTSSSVQRAM-----PG--TDEPQDVCGAEESKGNLESPKQGSNKIKLKSRLS 506

  Fly   302 HLARNLKYI-----------DPENRCFELHSPDGVHSCILRAADSAEALVWFN----ALHSAMGT 351
            .....|:.:           ||..|..|: |.||....:.:..||:.|...::    :..|...|
Human   507 GGVHRLESVEEYNELMVRNGDPRIRMLEV-SRDGRKHSLPQLLDSSSASQEYHIVKKSTRSLSTT 570

  Fly   352 STQRALAEANRALTNLIGELKHIGWLSKRMSGGGSSGSAGGGAASGGSGTSNSVVAGELVSPSGR 416
            ..:........::.::||..|..|      .|.|.|.:.|.....|..|     :..:.:.|:|.
Human   571 QVESPWRLIRPSVISIIGLYKEKG------KGLGFSIAGGRDCIRGQMG-----IFVKTIFPNGS 624

  Fly   417 SSSESS-DESDKWLPI 431
            ::.:.. .|.|:.|.:
Human   625 AAEDGRLKEGDEILDV 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622
PDZ_signaling 163..244 CDD:238492 31/102 (30%)
PHsplit_syntrophin <293..351 CDD:269960 15/74 (20%)
PDZD2XP_005248326.1 PDZ_signaling 335..416 CDD:238492 27/80 (34%)
PDZ_signaling 589..670 CDD:238492 13/63 (21%)
PDZ_signaling 726..810 CDD:238492
PDZ_signaling 2623..2694 CDD:238492
PDZ 2785..2867 CDD:214570
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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