DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and Sntb2

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_001355245.1 Gene:Sntb2 / 20650 MGIID:101771 Length:531 Species:Mus musculus


Alignment Length:536 Identity:186/536 - (34%)
Similarity:260/536 - (48%) Gaps:118/536 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RCGNMETRVRGAWYRVLVTLETDFLAVSLDESCEAAQPSNDGQSTTLNGTLGSNHSGGGGGGAGG 94
            :.|.:|..:|..|.||:..|..:.|:::.|.:....:|    .:...||.               
Mouse     9 KAGLVELLLRERWVRVVAELSGESLSLTGDAAAVEPEP----PAAAFNGL--------------- 54

  Fly    95 GGTGGGGQNGTLPNSASLQGMNIQDTELDGSASNDNGDRDPCLNNNNNAGDGGGMDMCDVPDHVA 159
             ..||||::                  |.||.:...|...|.......||:..          .:
Mouse    55 -PNGGGGES------------------LPGSPNRGLGPPSPPAPPRGPAGEAS----------AS 90

  Fly   160 NQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVGDAILTVNGEELRDAT 224
            ...|.||::|.:..||||||||||||||||||||||.|:||||::.|.:|||||:|||.:||.||
Mouse    91 PPVRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQAT 155

  Fly   225 HDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAFLCPLGPGVPT--------S 281
            ||:||:||||:|:.|.|||||:||||||.:|.|::|::.||       ...|..|:        |
Mouse   156 HDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWE-------GASPQSPSFSGSEDSGS 213

  Fly   282 PPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCILRAADSAEALVWFNALH 346
            |....||  .|.:.|||::...||||...|.|||..||||||..::.|||..|:|.|..||.|:|
Mouse   214 PKHQNTT--KDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIH 276

  Fly   347 SAMGTSTQRALAEANRAL--TNLIG---ELKHIGWLSK--RMSGGGSSGSAGGGAASGGSGTSNS 404
            :.:.....:.|||.|..|  |:..|   |:|||.||::  ::.||                    
Mouse   277 TNIMALLPQVLAELNAMLGATSTAGGSKEVKHIAWLAEQAKLDGG-------------------- 321

  Fly   405 VVAGELVSPSGRSSSESSDESDKWLPIFVAVTEREFRIYESAPWSVEAWSRPLEIYALATTRL-- 467
                                ..:|.|:.:||||::..:|:..||:.:||:.|...|.|..|||  
Mouse   322 --------------------RQQWRPVLMAVTEKDLLLYDCMPWTRDAWASPCHSYPLVATRLVH 366

  Fly   468 AGAGNNSSLNGQQTTVFCVRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVNYQREFSF-- 530
            :|:|..|...|...| |..|.|:.:|:.::..|.|||||::.|.|.||||.|.|....:|.|.  
Mouse   367 SGSGCRSPSLGSDLT-FATRTGSRQGIEMHLFRVETHRDLSTWTRILVQGCHAAAELIKEVSLDY 430

  Fly   531 -RCLFQGRQCQLVVHI 545
             ........|..:.|:
Mouse   431 GPAFLSKADCICIAHV 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622 9/30 (30%)
PDZ_signaling 163..244 CDD:238492 56/80 (70%)
PHsplit_syntrophin <293..351 CDD:269960 27/57 (47%)
Sntb2NP_001355245.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 45..95 14/97 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 195..220 6/31 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834110
Domainoid 1 1.000 160 1.000 Domainoid score I4056
eggNOG 1 0.900 - - E1_KOG3551
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 379 1.000 Inparanoid score I2047
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45230
OrthoDB 1 1.010 - - D1261897at2759
OrthoFinder 1 1.000 - - FOG0003604
OrthoInspector 1 1.000 - - otm43072
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10554
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2806
SonicParanoid 1 1.000 - - X1403
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.900

Return to query results.
Submit another query.