DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and Patj

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_766284.2 Gene:Patj / 12695 MGIID:1277960 Length:1834 Species:Mus musculus


Alignment Length:462 Identity:108/462 - (23%)
Similarity:169/462 - (36%) Gaps:116/462 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AQQPIPQ-QHSPSP----SGLRCGNMETRVRGAWYRVLVTLETDFLAVSLDESCEAAQPSNDGQS 73
            |..|.|: .|||||    .|....:.|.             |:...|..|.|. |:::|.:..|.
Mouse  1335 AVAPFPELSHSPSPVEDLGGTELVSSEE-------------ESSVDAKHLPEP-ESSKPEDLSQV 1385

  Fly    74 TTLNGTLGSNHSGGGGGGAGGGGTGGGGQNGTLPNSASLQ-GMNIQDTELDGSASNDNGDRDPCL 137
            ...|......                  :....|:||:.| ......|::..|:.:......|..
Mouse  1386 VDDNMVAEQQ------------------KESESPDSAACQIKQQTYSTQVSSSSQDSPSSPAPLC 1432

  Fly   138 NNNNNAGDGGGMDMCDVP-------------DHVANQKRHVRIIKSDNNGLGISIKGGRENRM-P 188
            .:.:....|.|.....:|             ..|..|:..:.|.|. .:|||:||.||::..: .
Mouse  1433 QSAHADVTGSGNFQAPLPVDPAPLSVDPATCPIVPGQEMIIEISKG-RSGLGLSIVGGKDTPLDA 1496

  Fly   189 ILISKIFRGMAADQAKGLYVGDAILTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPYF 253
            |:|.:::...||.:...|:.||.||.|||.:||.::|:||:.||:::.:.|.|.|        |.
Mouse  1497 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQKVRLVV--------YR 1553

  Fly   254 RKASIISEVGWELQRAFLCPLGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFE 318
            .:|....|...|:   ||..|          .|.|.|.      |.|:.:.:             
Mouse  1554 DEAQYRDEENLEV---FLVDL----------QKKTGRG------LGLSIVGK------------- 1586

  Fly   319 LHSPDGVH-SCILR--AADSAEALVWFNALHSAMGT----STQRALAEANRALTNL----IGELK 372
             .|..||. |.|::  |||....|:..:.:.|..|.    ::|..:|...:.:..|    ||.|:
Mouse  1587 -RSGSGVFISDIVKGGAADLDGRLIRGDQILSVNGEDMRHASQETVATILKCVQGLVQLEIGRLR 1650

  Fly   373 HIGWLSKRMSGGGSSGSAGGGAASGGSGTSNSVVAGELVSPSGRSSSESSDESDKWLPIFVAVTE 437
            ...|.:.|.:...|.|..  .:|......|.:.|...|.:..|  :..|||...|       .||
Mouse  1651 AGSWAASRKTSQNSQGDQ--HSAHSSCRPSFAPVITSLQNLVG--TKRSSDPPQK-------CTE 1704

  Fly   438 REFRIYE 444
            .|.|..|
Mouse  1705 EEPRTVE 1711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622 4/30 (13%)
PDZ_signaling 163..244 CDD:238492 30/81 (37%)
PHsplit_syntrophin <293..351 CDD:269960 12/60 (20%)
PatjNP_766284.2 L27_2 8..65 CDD:312549
PDZ_signaling 135..218 CDD:238492
PDZ_signaling 248..325 CDD:238492
PDZ_signaling 363..450 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 456..488
PDZ_signaling 572..636 CDD:238492
PDZ 685..774 CDD:214570
PDZ_signaling 1072..1163 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1171..1219
PDZ 1242..1327 CDD:214570
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1340..1453 26/144 (18%)
MPDZ_u10 <1453..1468 CDD:374710 1/14 (7%)
PDZ 1469..1554 CDD:214570 33/93 (35%)
PDZ_signaling 1566..1646 CDD:238492 22/112 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1657..1676 4/20 (20%)
PDZ_signaling 1707..1792 CDD:238492 2/5 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1811..1834
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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