DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syn1 and PATJ

DIOPT Version :9

Sequence 1:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster
Sequence 2:XP_011538764.1 Gene:PATJ / 10207 HGNCID:28881 Length:1937 Species:Homo sapiens


Alignment Length:470 Identity:102/470 - (21%)
Similarity:166/470 - (35%) Gaps:127/470 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ESSSLGRTPPAAQQPIPQQHSPSPSGLRCGNMETRVRGAWYRVLVTLETDFLA-------VSLDE 60
            :..:|...|..|...:.||..|:........:......:::    :.:.||..       :|:| 
Human  1390 QQKALEYPPDNAVSQMKQQKYPTKVSFSSQEIPLAPASSYH----STDADFTGYGGFQAPLSVD- 1449

  Fly    61 SCEAAQPSNDGQSTTLNGTLGSNHSGGGGGGAGGGGTGGGGQNGTLPNSAS-------------- 111
              .|..|...||...:.  :....||.|....||..|....:.|: |.:.|              
Human  1450 --PATCPIVPGQEMIIE--ISKGRSGLGLSIVGGKDTPLFWRLGS-PRAWSQHLVRAFMLHHPVT 1509

  Fly   112 -LQGMN---IQDTELDGSASNDN----GDRDPCLNN---NNNAGDGGGMDMCDVPDHVA----NQ 161
             ::|.|   |.:...:|:|:.|.    ||:...:|.   .|::.:.....:...|..|.    ..
Human  1510 EVEGQNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRD 1574

  Fly   162 KRHVR-----------IIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVGDAILTV 215
            :.|.|           :.|....|||:||.|.| |...:.||.|.:|.|||....|..||.||:|
Human  1575 EAHYRDEENLEIFPVDLQKKAGRGLGLSIVGKR-NGSGVFISDIVKGGAADLDGRLIQGDQILSV 1638

  Fly   216 NGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAFLCPLGPGVPT 280
            |||::|:|:.:.....||.:..:|.||:..||..:  :..|...|:.....|::......|..  
Human  1639 NGEDMRNASQETVATILKCAQGLVQLEIGRLRAGS--WTSARTTSQNSQGSQQSAHSSCHPSF-- 1699

  Fly   281 SPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCILRAADSAEALVWFNAL 345
               ||..|          .|.:|....:..||..:                           |: 
Human  1700 ---APVIT----------GLQNLVGTKRVSDPSQK---------------------------NS- 1723

  Fly   346 HSAMGTSTQRALAEANRALTNLIGELKHIGWLSKRMSGGGSSGSAGGG--------AASGGSGTS 402
                ||..:....|.||.|::.:|           :|..|..||..|.        .|||.:..:
Human  1724 ----GTDMEPRTVEINRELSDALG-----------ISIAGGRGSPLGDIPVFIAMIQASGVAART 1773

  Fly   403 NSVVAGE-LVSPSGR 416
            ..:..|: :||.:|:
Human  1774 QKLKVGDRIVSINGQ 1788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn1NP_001262192.1 PH-like 30..>61 CDD:302622 4/37 (11%)
PDZ_signaling 163..244 CDD:238492 34/91 (37%)
PHsplit_syntrophin <293..351 CDD:269960 5/57 (9%)
PATJXP_011538764.1 L27_2 8..65 CDD:117611
PDZ_signaling 135..218 CDD:238492
PDZ_signaling 246..325 CDD:238492
PDZ_signaling 366..450 CDD:238492
PDZ_signaling 570..634 CDD:238492
PDZ 683..772 CDD:214570
PDZ_signaling 1066..1157 CDD:238492
PDZ 1236..1321 CDD:214570
PDZ 1459..1574 CDD:214570 22/117 (19%)
PDZ_signaling 1586..1666 CDD:238492 31/80 (39%)
PDZ_signaling 1729..1814 CDD:238492 17/71 (24%)
PDZ_signaling 1852..1936 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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