Protein Alignment Rpb8 and RPB8

DIOPT Version :9

• Sequence 1: NP_649352.1
• Gene: Rpb8 / 40415
• FlyBaseID: FBgn0037121
• Length: 149
• Species: Drosophila melanogaster
• Sequence 2: NP_014867.1
• Gene: RPB8 / 854399
• SGDID: S000005750
• Length: 146
• Species: Saccharomyces cerevisiae
• Alignment Length: 157
• Identity: 56/157 - (35%)
• Similarity: 89/157 - (56%)
• Gaps: 22/157 - (14%)

  Fly     1 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMD---LILDINSWLYPMELGDKFRLVLAT 62
            |:..||:|||.|.::||  .::::|.|:  |:.|...|   |.||||..|:|:...|...:.:|:
Yeast     1 MSNTLFDDIFQVSEVDP--GRYNKVCRI--EAASTTQDQCKLTLDINVELFPVAAQDSLTVTIAS 61

  Fly    63 TLREDGCP--DSGEYN----PMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASR--LSAYVSFGG 119
            :|..:..|  ||....    |...:.:.||.::|||||..|:.|      |.|:  ::.|.||||
Yeast    62 SLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFE------EVSKDLIAVYYSFGG 120

  Fly   120 LLMRLQGDANNLHGFEVDQHMYLLMKR 146
            |||||:|:..||:..: .::.|||::|
Yeast   121 LLMRLEGNYRNLNNLK-QENAYLLIRR 146

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpb8	NP_649352.1	RPOL8c	2..146	CDD:197821	54/154 (35%)
RPB8	NP_014867.1	RNA_pol_Rpb8	10..145	CDD:397790	50/145 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C157343020
Domainoid	1	1.000	75	1.000	Domainoid score	I2145
eggNOG	1	0.900	-	-		E1_KOG3400
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	81	1.000	Inparanoid score	I1617
Isobase	1	0.950	-	0	Normalized mean entropy	S652
OMA	1	1.010	-	-		QHG53918
OrthoFinder	1	1.000	-	-		FOG0004425
OrthoInspector	1	1.000	-	-		oto100062
orthoMCL	1	0.900	-	-		OOG6_102056
Panther	1	1.100	-	-	LDO	PTHR10917
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1177
SonicParanoid	1	1.000	-	-		X3136
TreeFam	1	0.960	-	-
	15	14.740