Protein Alignment Rpb8 and NRPB8A

DIOPT Version :9

• Sequence 1: NP_649352.1
• Gene: Rpb8 / 40415
• FlyBaseID: FBgn0037121
• Length: 149
• Species: Drosophila melanogaster
• Sequence 2: NP_175827.1
• Gene: NRPB8A / 841866
• AraportID: AT1G54250
• Length: 146
• Species: Arabidopsis thaliana
• Alignment Length: 144
• Identity: 69/144 - (47%)
• Similarity: 101/144 - (70%)
• Gaps: 3/144 - (2%)

  Fly     4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDG 68
            :||||||.|..:||:|||||:|:|:...|.:.:|.:.||:|:.:||:.:||||.|.||.||..||
plant     6 ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPTLNLDG 70

  Fly    69 CPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLLMRLQGDANNLHG 133
            .||:|.:.|...: |.||.:||:|:||:|:|  .|...:..:...|||||||||.|:||..::..
plant    71 TPDTGYFTPGAKK-TLADKYEYIMHGKLYKI--SERDGKTPKAELYVSFGGLLMLLKGDPAHISH 132

  Fly   134 FEVDQHMYLLMKRL 147
            ||:||.::|||::|
plant   133 FELDQRLFLLMRKL 146

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpb8	NP_649352.1	RPOL8c	2..146	CDD:197821	68/141 (48%)
NRPB8A	NP_175827.1	RNA_pol_Rpb8	12..144	CDD:397790	62/134 (46%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	136	1.000	Domainoid score	I1601
eggNOG	1	0.900	-	-		E1_KOG3400
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H4540
Inparanoid	1	1.050	141	1.000	Inparanoid score	I1783
OMA	1	1.010	-	-		QHG53918
OrthoDB	1	1.010	-	-		D1504067at2759
OrthoFinder	1	1.000	-	-		FOG0004425
OrthoInspector	1	1.000	-	-		otm3070
orthoMCL	1	0.900	-	-		OOG6_102056
Panther	1	1.100	-	-	O	PTHR10917
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X3136
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	14	13.840