Protein Alignment Rpb8 and polr2h

DIOPT Version :9

• Sequence 1: NP_649352.1
• Gene: Rpb8 / 40415
• FlyBaseID: FBgn0037121
• Length: 149
• Species: Drosophila melanogaster
• Sequence 2: NP_001016113.1
• Gene: polr2h / 548867
• XenbaseID: XB-GENE-491773
• Length: 150
• Species: Xenopus tropicalis
• Alignment Length: 150
• Identity: 115/150 - (76%)
• Similarity: 133/150 - (88%)
• Gaps: 1/150 - (0%)

  Fly     1 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLR 65
            |||:||||||:|||:||||:||||||||||||||||||||||:|..:||::||||||||:|:||.
 Frog     1 MAGILFEDIFDVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNIQVYPVDLGDKFRLVIASTLY 65

  Fly    66 EDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNE-ASRLSAYVSFGGLLMRLQGDAN 129
            |||..|.|||||.:...:|||.|||:||||:|||||||...| |:|||||||:||||||||||||
 Frog    66 EDGTLDDGEYNPTDDRPSRADQFEYIMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDAN 130

  Fly   130 NLHGFEVDQHMYLLMKRLAF 149
            ||||||||..:|||||:|||
 Frog   131 NLHGFEVDSRVYLLMKKLAF 150

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpb8	NP_649352.1	RPOL8c	2..146	CDD:197821	110/144 (76%)
polr2h	NP_001016113.1	RNA_pol_Rpb8	8..147	CDD:367703	105/138 (76%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	224	1.000	Domainoid score	I2498
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	1	1.000	-	-		H4540
Inparanoid	1	1.050	240	1.000	Inparanoid score	I3264
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1504067at2759
OrthoFinder	1	1.000	-	-		FOG0004425
OrthoInspector	1	1.000	-	-		oto104821
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1177
SonicParanoid	1	1.000	-	-		X3136
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	8	8.090