Protein Alignment Rpb8 and rpb8

DIOPT Version :9

• Sequence 1: NP_649352.1
• Gene: Rpb8 / 40415
• FlyBaseID: FBgn0037121
• Length: 149
• Species: Drosophila melanogaster
• Sequence 2: NP_595915.1
• Gene: rpb8 / 2539794
• PomBaseID: SPBC14C8.12
• Length: 125
• Species: Schizosaccharomyces pombe
• Alignment Length: 143
• Identity: 57/143 - (39%)
• Similarity: 83/143 - (58%)
• Gaps: 22/143 - (15%)

  Fly     4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDG 68
            ||.::||.|..:|.:  |:.||||:...|....|:|.|||||.:||:|....|.|.:.:.|..
pombe     5 VLLDEIFTVTSVDKQ--KYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNS-- 65

  Fly    69 CPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLLMRLQGDANNLHG 133
             ||..|            :.:|:||||:||:|  ||.:|  ::|.|||||||||.::|....|:.
pombe    66 -PDLKE------------AADYIMYGKVYRVE--EAKDE--KVSVYVSFGGLLMAIEGSHRKLYR 113

  Fly   134 FEVDQHMYLLMKR 146
            ..:| |:|||::|
pombe   114 LSLD-HVYLLLRR 125

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpb8	NP_649352.1	RPOL8c	2..146	CDD:197821	56/141 (40%)
rpb8	NP_595915.1	RPOL8c	3..125	CDD:197821	56/141 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	86	1.000	Domainoid score	I2187
eggNOG	1	0.900	-	-		E1_KOG3400
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	89	1.000	Inparanoid score	I1768
OMA	1	1.010	-	-		QHG53918
OrthoFinder	1	1.000	-	-		FOG0004425
OrthoInspector	1	1.000	-	-		oto101795
orthoMCL	1	0.900	-	-		OOG6_102056
Panther	1	1.100	-	-	LDO	PTHR10917
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1177
SonicParanoid	1	1.000	-	-		X3136
TreeFam	1	0.960	-	-
	13	12.860