DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11247 and jim

DIOPT Version :10

Sequence 1:NP_649351.2 Gene:CG11247 / 40414 FlyBaseID:FBgn0037120 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster


Alignment Length:370 Identity:107/370 - (28%)
Similarity:156/370 - (42%) Gaps:86/370 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 GEPVKRKHH------VCSQCSKEFGGKTDLQRHMLIHSDERPHKCKDCGKSYRQAVNLKNHITTA 143
            |.|.|.|.|      .|..|.|:|..|:.|.:|..||:|.||..|.:|||.:||..:|..|: ..
  Fly   315 GRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHL-RI 378

  Fly   144 HEHRKQFVCSQCPKSFALKERLRLHMRLHSGEKPYPCDLCDKKFARGGQLQQHMVSHHKTSIQ-- 206
            |.:.|.|.|..|.:||..:..|..|:|:||||||:.|..|.|.|.:...|.||:.:|...|..  
  Fly   379 HANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLI 443

  Fly   207 ------------------QFNCTKCSASFSTNANLRVHMERHEQG-------------------- 233
                              :.|.||...:.:...    :.:...||                    
  Fly   444 FKNGPHPTLWPSDVPFPGEDNDTKGDIAGTGGG----YHDEDSQGTPDGSGGMHYPSYFKDGKGQ 504

  Fly   234 ------MEH------------RCSICENQFANELALRAHINQEHHKLTQFECEICHKMIEPDEDL 280
                  ::|            ||.||:.:|..:..|..| ...|.:...:.|..|.|.......|
  Fly   505 KILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQH-GCIHIESRPYPCPECGKRFRQQSHL 568

  Fly   281 ATHMQRHTAVKTHVCEVCNTYFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSSVLKLHIRKHTG 345
            ..|::.||..|...|..|..:|.|::..|.|:|:||||:||:|..|.:.|...::|..|.|.|.|
  Fly   569 TQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQG 633

  Fly   346 EKPFRCQL--C------EDEVAFSQLAHLKNHMK----KIHKQQK 378
            ::||.|.:  |      |:||.    .|:.|||.    |:.:||:
  Fly   634 DRPFCCPMPNCRRRFATENEVT----KHIDNHMNPNTTKVRRQQQ 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11247NP_649351.2 COG5048 <88..247 CDD:227381 59/222 (27%)
C2H2 Zn finger 95..115 CDD:275368 7/19 (37%)
C2H2 Zn finger 123..144 CDD:275368 8/20 (40%)
C2H2 Zn finger 152..172 CDD:275368 7/19 (37%)
C2H2 Zn finger 180..200 CDD:275368 7/19 (37%)
COG5048 <192..369 CDD:227381 56/242 (23%)
C2H2 Zn finger 210..230 CDD:275370 2/19 (11%)
C2H2 Zn finger 238..260 CDD:275371 6/21 (29%)
C2H2 Zn finger 267..287 CDD:275368 5/19 (26%)
C2H2 Zn finger 295..315 CDD:275368 7/19 (37%)
C2H2 Zn finger 323..343 CDD:275368 6/19 (32%)
C2H2 Zn finger 351..374 CDD:275368 10/34 (29%)
C2H2 Zn finger 382..399 CDD:275368
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 7/19 (37%)
COG5048 355..666 CDD:227381 89/320 (28%)
C2H2 Zn finger 359..379 CDD:275368 8/20 (40%)
C2H2 Zn finger 387..407 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 527..547 CDD:275368 6/20 (30%)
C2H2 Zn finger 555..575 CDD:275368 5/19 (26%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
C2H2 Zn finger 611..631 CDD:275368 6/19 (32%)
C2H2 Zn finger 639..661 CDD:275368 6/25 (24%)
Blue background indicates that the domain is not in the aligned region.

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