DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11247 and topi

DIOPT Version :10

Sequence 1:NP_649351.2 Gene:CG11247 / 40414 FlyBaseID:FBgn0037120 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster


Alignment Length:495 Identity:122/495 - (24%)
Similarity:184/495 - (37%) Gaps:143/495 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SLSSPPAARESSPGPTLAIKRRKSSLASLRDACVDEEEDD--GGEQDSKDDDYVQPQLKKSARKG 85
            ::|:|||.. |.|.....|:..:   ..||....||.:.|  .|.:.|          :|:|.||
  Fly   176 TVSAPPAPL-SKPASERVIRENQ---VRLRRYIKDEMKYDLATGIESS----------RKNAAKG 226

  Fly    86 EPVKRKHHVCSQCSKEFGGKTDLQRHMLIH--------SDERPH-----------KCKDCGK-SY 130
            .      :.|:.|.::|...:.|.|||..|        :.|:||           ||..||: .|
  Fly   227 P------NECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPHTIPAAGLHVVVKCNSCGRIFY 285

  Fly   131 RQAVNLKNHITTAHEH--RKQFVCSQCPKSFALKERLRLHMRL---------HSGEKPYP----- 179
            ...|..::.:....||  .:|...:|.|.:.|....|.|...:         .|.:...|     
  Fly   286 DPQVAFRHGLIHDSEHSTMRQSPMTQVPSNRADFNELLLDGEMLIDNDPAFATSNQNTNPPKKEM 350

  Fly   180 -----------CDLCDKKFARGGQLQQHMVSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQG 233
                       |:.|:..||...:|..|..||  .:.::|.||.|....:|.....:|.:.....
  Fly   351 FSSLILGSVLQCEFCEYIFADIAELLVHSASH--VAERRFECTACDIQMNTAKEASIHFQTDCIF 413

  Fly   234 MEHR-------------CSICENQFANELALRAH--------------------------IN--- 256
            |...             |::||.:|||...|:.|                          :|   
  Fly   414 MREAIRSLNVTLSRYFVCNVCELKFANTDLLQEHRCTSFHYFPRLNENGKKLLLPCDFCDVNFEF 478

  Fly   257 --------QEHH----------------KLTQFECEICHKMIEPDEDLATHMQRHTAVKTHVC-- 295
                    :|.|                ::.|:.|:||.|.......|..|::.|..||..||  
  Fly   479 AHDFLAHSEEKHLNKKKREKETRNTGAGRIRQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCQE 543

  Fly   296 EVCNTYFTQKSQYNVHMR-MHTGERPYQCRICHQTFAHSSVLKLHIRKHTGEKPFRCQLCEDEVA 359
            |.|:..||.:...|.|:| .|||||||.|.:|.:.|...||...|...|.||:.:.|:.|...  
  Fly   544 ENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEECGKR-- 606

  Fly   360 FSQLAHLKNHMKKIHKQQKPYMCEGCHDFFKIKVELQSHV 399
            |.:...|||| ::||..:|||.|..|...|:.:.:...|:
  Fly   607 FYRADALKNH-QRIHTGEKPYSCLFCTKTFRQRGDRDKHI 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11247NP_649351.2 COG5048 <88..247 CDD:227381 46/218 (21%)
C2H2 Zn finger 95..115 CDD:275368 7/19 (37%)
C2H2 Zn finger 123..144 CDD:275368 5/21 (24%)
C2H2 Zn finger 152..172 CDD:275368 5/28 (18%)
C2H2 Zn finger 180..200 CDD:275368 6/19 (32%)
COG5048 <192..369 CDD:227381 62/245 (25%)
C2H2 Zn finger 210..230 CDD:275370 5/19 (26%)
C2H2 Zn finger 238..260 CDD:275371 10/58 (17%)
C2H2 Zn finger 267..287 CDD:275368 6/19 (32%)
C2H2 Zn finger 295..315 CDD:275368 8/22 (36%)
C2H2 Zn finger 323..343 CDD:275368 6/19 (32%)
C2H2 Zn finger 351..374 CDD:275368 7/22 (32%)
C2H2 Zn finger 382..399 CDD:275368 3/16 (19%)
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370 7/19 (37%)
C2H2 Zn finger 277..297 CDD:275370 5/19 (26%)
C2H2 Zn finger 431..453 CDD:275368 8/21 (38%)
COG5048 <450..647 CDD:227381 54/199 (27%)
C2H2 Zn finger 469..490 CDD:275368 2/20 (10%)
C2H2 Zn finger 513..564 CDD:275368 18/50 (36%)
C2H2 Zn finger 541..561 CDD:275368 7/19 (37%)
C2H2 Zn finger 572..592 CDD:275368 6/19 (32%)
C2H2 Zn finger 600..620 CDD:275368 7/22 (32%)
zf-H2C2_2 612..637 CDD:463886 12/25 (48%)
C2H2 Zn finger 628..646 CDD:275368 4/18 (22%)

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