DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11247 and scrt

DIOPT Version :10

Sequence 1:NP_649351.2 Gene:CG11247 / 40414 FlyBaseID:FBgn0037120 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_523911.2 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster


Alignment Length:276 Identity:70/276 - (25%)
Similarity:113/276 - (40%) Gaps:44/276 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SVSKEDAVSLLTDSGISLSSPPAARESSPGPTLAIKRRKSSLASLR---DACVDEEEDDG----- 63
            ||..|...:....|..|...|.:...:|...:..::...|:..:..   |.|:.:.|..|     
  Fly   360 SVVNEQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDGEHSGASGAS 424

  Fly    64 -------------GEQDSKDDDYVQPQLKKSARKGEPV---KRKHHVCSQCSKEFGGKTDLQRHM 112
                         .:..||......|   .:|..|.|.   ::..:.||:|.|::...::|.||.
  Fly   425 AKTVAYTYEAFFVSDGRSKRKHVADP---AAAASGVPTPDQQKTKYTCSECGKQYATSSNLSRHK 486

  Fly   113 LIH---SDERPHKCKDCGKSYRQAVNLKNHITTAHEHRKQFVCSQCPKSFALKERLRLHMRLHSG 174
            ..|   ..:...||..|||:|.....|..|:.|   |:....|..|.|.|:....|:.|:|.|:|
  Fly   487 QTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLT---HKLSHSCGVCGKLFSRPWLLQGHLRSHTG 548

  Fly   175 EKPYPCDLCDKKFARGGQLQQHMVSHHKTSI-QQFNCTKCSASFSTNANLRVHMERHEQGMEHRC 238
            ||||.|..|.|.||....|:.||.:|   |: :.|.|.:|..:|:    |:.::.:|   :|..|
  Fly   549 EKPYGCAHCGKAFADRSNLRAHMQTH---SVDKNFECKRCHKTFA----LKSYLNKH---LESAC 603

  Fly   239 SICENQFANELALRAH 254
            ...|.:....::|..|
  Fly   604 LKDEEELMMSMSLSMH 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11247NP_649351.2 COG5048 <88..247 CDD:227381 50/165 (30%)
C2H2 Zn finger 95..115 CDD:275368 7/19 (37%)
C2H2 Zn finger 123..144 CDD:275368 8/20 (40%)
C2H2 Zn finger 152..172 CDD:275368 7/19 (37%)
C2H2 Zn finger 180..200 CDD:275368 8/19 (42%)
COG5048 <192..369 CDD:227381 16/64 (25%)
C2H2 Zn finger 210..230 CDD:275370 4/19 (21%)
C2H2 Zn finger 238..260 CDD:275371 4/17 (24%)
C2H2 Zn finger 267..287 CDD:275368
C2H2 Zn finger 295..315 CDD:275368
C2H2 Zn finger 323..343 CDD:275368
C2H2 Zn finger 351..374 CDD:275368
C2H2 Zn finger 382..399 CDD:275368
scrtNP_523911.2 zf-C2H2 467..489 CDD:395048 7/21 (33%)
C2H2 Zn finger 469..489 CDD:275370 7/19 (37%)
C2H2 Zn finger 500..520 CDD:275368 8/22 (36%)
C2H2 Zn finger 526..546 CDD:275368 7/19 (37%)
zf-H2C2_2 539..562 CDD:463886 12/22 (55%)
C2H2 Zn finger 554..574 CDD:275368 8/19 (42%)
zf-C2H2 554..574 CDD:395048 8/19 (42%)
zf-H2C2_2 566..590 CDD:463886 8/26 (31%)
C2H2 Zn finger 582..599 CDD:275368 5/23 (22%)
Blue background indicates that the domain is not in the aligned region.

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