DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11247 and L

DIOPT Version :10

Sequence 1:NP_649351.2 Gene:CG11247 / 40414 FlyBaseID:FBgn0037120 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_001188929.1 Gene:L / 36609 FlyBaseID:FBgn0288433 Length:1366 Species:Drosophila melanogaster


Alignment Length:490 Identity:92/490 - (18%)
Similarity:153/490 - (31%) Gaps:178/490 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 GEPVKRK---HHVCSQCSKEFGGKTDLQRHMLIHSDERPHKCKDCGKSYRQAVNLKNHITTAHEH 146
            ||.:|.:   .:.|..|.|.|.....|:.|:..|::..|.||:.|.|.::...:...| ...|.:
  Fly   281 GEGIKSRGDGSYQCQFCEKTFPRLGYLKHHVQSHAEHLPFKCEYCSKLFKHKRSRDRH-KKLHTN 344

  Fly   147 RKQFVCSQCPKSFALKERLRLHMRLHSGEKPYPCDLCDKKFARGGQLQQHMVSHHKT-------- 203
            .:.:.|..|..:|:..:.|::||:.|..:||:.|.:|::.:.....|..||..|.|.        
  Fly   345 ERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGG 409

  Fly   204 -----------------------SIQQ-------------------------------------- 207
                                   |:|:                                      
  Fly   410 NPNALNYSPRSTGSASASVSSNGSLQKRRYALALASDSSPSRMDFPKRSRSNHVGGTTTTATPTP 474

  Fly   208 -FNCTKCS--ASFSTNANLRVHMER-HEQ--------------GMEHRCSICENQFANELALRAH 254
             ..|:.|.  ..||:...|..|::. |||              |.:..|..|..:|.|...|..|
  Fly   475 LLRCSYCPKVTEFSSLEQLNAHLQSVHEQPQTQAVKTPVQEGEGFQLSCEYCTMKFGNIAGLFQH 539

  Fly   255 I-------------------------------------------------------------NQE 258
            :                                                             |.:
  Fly   540 MRSTHMDRLSSPNSYYEHFNRLATAGTFSPRLALDLPKIKPDLGSPERESRPAEDDLPTDLSNNK 604

  Fly   259 HHKLTQ-----------------FECEICHKMIEPDEDLATHMQRHTAVKTH-VCEVCNTYFTQK 305
            ...||.                 |.|..|:..:...|....|::.|.|.... ||..|.....::
  Fly   605 RRPLTPNPQAQTPLAPPSAPPGVFFCNQCNAGLPDFESFRNHLKSHIAEGMQLVCPHCGMSLPEQ 669

  Fly   306 SQYNVHMRMH---TGERPYQC-RICHQTFAHSSVLKLHIRKHTGEKPFRCQLCEDEVAFSQLAHL 366
            |::..|:..|   ||.. :.| ..|.::||.|..|:.|:.........:|.|| .|:..|::| :
  Fly   670 SEFERHVVGHFLITGSE-FNCSSSCGKSFAKSEDLQQHLLSEHVLTLLKCSLC-SELCESRMA-M 731

  Fly   367 KNHMKKIHKQQ-KPYMCEGCHDFFKIKVELQSHVE 400
            :.|:...|.|: |...|..|.:.|:...|...||:
  Fly   732 QLHLACAHSQETKLLRCSACLELFRSDAEFHVHVK 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11247NP_649351.2 COG5048 <88..247 CDD:227381 46/248 (19%)
C2H2 Zn finger 95..115 CDD:275368 6/19 (32%)
C2H2 Zn finger 123..144 CDD:275368 4/20 (20%)
C2H2 Zn finger 152..172 CDD:275368 6/19 (32%)
C2H2 Zn finger 180..200 CDD:275368 5/19 (26%)
COG5048 <192..369 CDD:227381 54/346 (16%)
C2H2 Zn finger 210..230 CDD:275370 6/22 (27%)
C2H2 Zn finger 238..260 CDD:275371 7/82 (9%)
C2H2 Zn finger 267..287 CDD:275368 4/19 (21%)
C2H2 Zn finger 295..315 CDD:275368 4/19 (21%)
C2H2 Zn finger 323..343 CDD:275368 7/20 (35%)
C2H2 Zn finger 351..374 CDD:275368 7/22 (32%)
C2H2 Zn finger 382..399 CDD:275368 4/16 (25%)
LNP_001188929.1 C2H2 Zn finger 294..314 CDD:275368 6/19 (32%)
C2H2 Zn finger 322..342 CDD:275368 4/20 (20%)
COG5048 336..769 CDD:227381 77/435 (18%)
C2H2 Zn finger 350..370 CDD:275368 6/19 (32%)
C2H2 Zn finger 378..398 CDD:275368 5/19 (26%)
C2H2 Zn finger 630..650 CDD:275368 4/19 (21%)
C2H2 Zn finger 659..679 CDD:275368 4/19 (21%)
C2H2 Zn finger 689..707 CDD:275368 6/17 (35%)
C2H2 Zn finger 1020..1041 CDD:275368
C2H2 Zn finger 1049..1069 CDD:275368
C2H2 Zn finger 1197..1217 CDD:275368
C2H2 Zn finger 1229..1246 CDD:275368
C2H2 Zn finger 1258..1278 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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