DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11247 and ZNF540

DIOPT Version :9

Sequence 1:NP_001097659.1 Gene:CG11247 / 40414 FlyBaseID:FBgn0037120 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_001165696.1 Gene:ZNF540 / 163255 HGNCID:25331 Length:660 Species:Homo sapiens


Alignment Length:335 Identity:100/335 - (29%)
Similarity:169/335 - (50%) Gaps:31/335 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 RKHHVCSQCSKEFGGKTDLQRHMLIHSDERPHKCKDCGKSYRQAVNLKNHITTAHEHRKQFVCSQ 154
            :|.:.|.:|.|.|.....|.||..||:..:|::||:|||::|.:..|..|..| |..:|.:.|.:
Human   324 KKPYECKECGKAFSVCGQLTRHQKIHTGVKPYECKECGKTFRLSFYLTEHRRT-HAGKKPYECKE 387

  Fly   155 CPKSFALKERLRLHMRLHSGEKPYPCDLCDKKFARGGQLQQH----------------------- 196
            |.|||.::.:|..|..:|:|.||:.|.:|:|.|:..|.|:.|                       
Human   388 CGKSFNVRGQLNRHKTIHTGIKPFACKVCEKAFSYSGDLRVHSRIHTGEKPYECKECGKAFMLRS 452

  Fly   197 -MVSHHK--TSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICENQFANELALRAHINQE 258
             :..|.:  |.::.:.|.:|..:|...:.:.:|.:.|.....::|..|...|.....|..| .:.
Human   453 VLTEHQRLHTGVKPYECKECGKTFRVRSQISLHKKIHTDVKPYKCVRCGKTFRFGFYLTEH-QRI 516

  Fly   259 HHKLTQFECEICHKMIEPDEDLATHMQRHTAVKTHVCEVCNTYFTQKSQYNVHMRMHTGERPYQC 323
            |.....::|:.|.|......:|..|::.|:.:|.:.|:.|...|:::.|:..|.::|||.:||:|
Human   517 HTGEKPYKCKECGKAFIRRGNLKEHLKIHSGLKPYDCKECGKSFSRRGQFTEHQKIHTGVKPYKC 581

  Fly   324 RICHQTFAHSSVLKLHIRKHTGEKPFRCQLCEDEVAFSQLAHLKNHMKKIHKQQKPYMCEGCHDF 388
            :.|.:.|:.|..|::|.|.||||||:.|:.|..  ||...:||..| ::||..:|||.|:.|...
Human   582 KECGKAFSRSVDLRIHQRIHTGEKPYECKQCGK--AFRLNSHLTEH-QRIHTGEKPYECKVCRKA 643

  Fly   389 FKIKVELQSH 398
            |:....|..|
Human   644 FRQYSHLYQH 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11247NP_001097659.1 COG5048 <88..247 CDD:227381 50/182 (27%)
C2H2 Zn finger 95..115 CDD:275368 7/19 (37%)
zf-H2C2_2 107..132 CDD:290200 11/24 (46%)
C2H2 Zn finger 123..144 CDD:275368 9/20 (45%)
C2H2 Zn finger 152..172 CDD:275368 7/19 (37%)
zf-H2C2_2 165..189 CDD:290200 10/23 (43%)
C2H2 Zn finger 180..200 CDD:275368 7/43 (16%)
COG5048 <192..369 CDD:227381 51/202 (25%)
C2H2 Zn finger 210..230 CDD:275370 4/19 (21%)
C2H2 Zn finger 238..260 CDD:275371 5/21 (24%)
C2H2 Zn finger 267..287 CDD:275368 5/19 (26%)
C2H2 Zn finger 295..315 CDD:275368 5/19 (26%)
zf-H2C2_2 309..332 CDD:290200 9/22 (41%)
C2H2 Zn finger 323..343 CDD:275368 7/19 (37%)
C2H2 Zn finger 351..374 CDD:275368 7/22 (32%)
C2H2 Zn finger 382..399 CDD:275368 5/17 (29%)
ZNF540NP_001165696.1 KRAB 6..66 CDD:214630
C2H2 Zn finger 189..209 CDD:275368
C2H2 Zn finger 217..237 CDD:275368
COG5048 241..620 CDD:227381 87/299 (29%)
C2H2 Zn finger 245..265 CDD:275368
C2H2 Zn finger 273..293 CDD:275368
C2H2 Zn finger 301..321 CDD:275368
C2H2 Zn finger 329..349 CDD:275368 7/19 (37%)
C2H2 Zn finger 357..377 CDD:275368 9/20 (45%)
C2H2 Zn finger 385..405 CDD:275368 7/19 (37%)
C2H2 Zn finger 413..433 CDD:275368 7/19 (37%)
C2H2 Zn finger 441..461 CDD:275368 1/19 (5%)
C2H2 Zn finger 469..489 CDD:275368 4/19 (21%)
C2H2 Zn finger 497..517 CDD:275368 5/20 (25%)
C2H2 Zn finger 525..545 CDD:275368 5/19 (26%)
C2H2 Zn finger 553..573 CDD:275368 5/19 (26%)
C2H2 Zn finger 581..601 CDD:275368 7/19 (37%)
C2H2 Zn finger 609..629 CDD:275368 7/22 (32%)
zf-H2C2_2 621..646 CDD:316026 11/25 (44%)
C2H2 Zn finger 637..657 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.000

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