DRSC/TRiP Functional Genomics Resources

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Protein Alignment Als2 and RCCD1

DIOPT Version :10

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:NP_291022.2 Gene:RCCD1 / 91433 HGNCID:30457 Length:376 Species:Homo sapiens


Alignment Length:348 Identity:80/348 - (22%)
Similarity:123/348 - (35%) Gaps:105/348 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 FCSGSQELFVVLTNGSVQRQATGSGRDVGHPHAWQTLGFDPLELHAEGVRIRRVCCSAQGVVFVG 153
            ||...|||            .:|.||.|..|        .||.   .||.|.||..|.....||.
Human    14 FCGFGQEL------------GSGRGRQVHSP--------SPLR---AGVDICRVSASWSYTAFVT 55

  Fly   154 ASGETYVMGS-------CGEVFKAEQQPRHMRLYEEGKELLDLAAGNEHFVMLVAPYNLADDALQ 211
            ..|...:.||       |.:.:.:|.....:|.....:.||.:.|              |:.||:
Human    56 RGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWA--------------AESALR 106

  Fly   212 ---------LSVASAKEEPEDE------------RASVKSISSGHSERSVAANTRHL-LHQGYAL 254
                     :..|..:::|..|            ||.|...:..:...:.....|.| |...:||
Human   107 GEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHAL 171

  Fly   255 L---HTQLFTFGASNNGLLGSGDHIRRANVMRLQKLDSMGVCSIAAGLEHTVARTLDGRLYHWGL 316
            |   ..|:|::|...:|.||.|..........|:.|..:.:..:|||..|:|..:..|.:|.||.
Human   172 LLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSETGDIYIWGW 236

  Fly   317 NNHSQL----------GEDVS------------------------SPMEITITENTAALPIEQNS 347
            |...||          ||.|:                        :|. |.:....|.|.:...|
Human   237 NESGQLALPTRNLAEDGETVAREATELNEDGSQVKRTGGAEDGAPAPF-IAVQPFPALLDLPMGS 300

  Fly   348 -ALEATCGDYHTLLLNASGQIHS 369
             |::|:||..||.::..:|::::
Human   301 DAVKASCGSRHTAVVTRTGELYT 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 ATS1 <238..>367 CDD:444065 42/167 (25%)
PH-like 616..715 CDD:473070
COG4642 <745..890 CDD:443680
PLN03185 835..>962 CDD:215619
VPS9 1373..1479 CDD:460489
RCCD1NP_291022.2 Interaction with KDM8. /evidence=ECO:0000269|PubMed:24981860 1..169 41/191 (21%)
ATS1 <160..368 CDD:444065 42/165 (25%)
RCC1 2 176..227 14/50 (28%)
RCC1 3 229..317 21/88 (24%)
RCC1 4 318..371 1/6 (17%)
Blue background indicates that the domain is not in the aligned region.

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