DRSC/TRiP Functional Genomics Resources

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Protein Alignment Als2 and jph1b

DIOPT Version :9

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:NP_001037813.1 Gene:jph1b / 556485 ZFINID:ZDB-GENE-060616-389 Length:673 Species:Danio rerio


Alignment Length:453 Identity:101/453 - (22%)
Similarity:163/453 - (35%) Gaps:117/453 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   759 EYPDGSVYCGELQHGIIEGFGKMVIPT-TGLYVGNFKGGRFHGHGVYEMHCKDSPESEVYEGNFC 822
            ::.||..:||..:.|...|.|....|. .|.|.|::..| |...|||..     |....|:|.:.
Zfish     7 DFDDGGTFCGGWEDGKAHGHGICTGPKGQGEYSGSWSNG-FEVVGVYTW-----PSGNTYKGYWA 65

  Fly   823 EGLFHGHGVMRNNRYIYVGEYQANARSGYGVIEDLVSGDKYMGMFADNKRSGIGSCITNRGDYFE 887
            :|..||.||....|::|.||:....:..|||.:.|.:..:|.|.:::..:.|.|......|..::
Zfish    66 QGKRHGLGVESKGRWLYRGEWSHGFKGRYGVRQSLNTPARYEGTWSNGLQDGYGVETYGDGGTYQ 130

  Fly   888 GSFSGDDLTGSGVAVFENDYYYEGELTLLGPNGRGEYYMPSGDACGGSGAMGTGEFDDTCELIGN 952
            |.:.|....|.||   .....| |..|::....|........:...||             ::.:
Zfish   131 GQWMGGMRHGYGV---RQSVPY-GMATVIRSPLRTSLASLRSEQSNGS-------------VLHD 178

  Fly   953 KMFGQLSGTWDTVRIQAGELVLNRRFPKYPSSLGRQVVDHNRK--WR--SLFNNF----ESDLAN 1009
            .|....:||       .|..|||     :.|.  .:||...:|  :|  |||.:.    :|| :.
Zfish   179 HMSDSPAGT-------RGGFVLN-----FHSD--SEVVSGKKKGLFRRGSLFGSLKQLRKSD-SR 228

  Fly  1010 CTASTSSSGGNQSAGTLRKSSKPTLSTAQI---------------------------W-----NC 1042
            .:.|:..|.....|...|.||....||...                           |     |.
Zfish   229 SSISSKRSSARSDATMSRISSSDANSTISFGDGEVADEYMPAEDNVDATTTESYLGEWKNDKRNG 293

  Fly  1043 IAV------------YMSKQR-------AREGTK-PGNYFNNILLS------LPLPQ-KTSSPLA 1080
            ..|            :::.:|       ..:||| .|.|.||:|:.      :||.. ||...:.
Zfish   294 FGVSERSNGMKYEGEWINNKRHGYGCTMFPDGTKEEGKYKNNVLVRGIKKQLIPLKNTKTKQKVD 358

  Fly  1081 KA---RTTTSALSKLQTEAASALDFLGFPPRRIQSQEALNSKPGGLQRADSLISMGHNTSRDL 1140
            :|   ....||:::.:.|.|::..    ...|.:::.|..:.....|.:|    :....:|||
Zfish   359 RAVEGAIRASAIARTKVEIATSRT----AHARAKAEAADQASLSASQESD----LARAVARDL 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 RCC1 258..304 CDD:278826
RCC1_2 292..321 CDD:290274
RCC1 308..361 CDD:278826
PH-like 616..715 CDD:302622
VPS9 1373..1479 CDD:280383
jph1bNP_001037813.1 MORN 106..128 CDD:280628 5/21 (24%)
MORN 305..327 CDD:280628 2/21 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4642
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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