DRSC/TRiP Functional Genomics Resources

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Protein Alignment Als2 and rcc2

DIOPT Version :10

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:NP_998341.1 Gene:rcc2 / 406455 ZFINID:ZDB-GENE-040426-2213 Length:495 Species:Danio rerio


Alignment Length:213 Identity:51/213 - (23%)
Similarity:84/213 - (39%) Gaps:64/213 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 PYNLADDAL------------QLSVASA--------KEEPEDERA-------------------- 226
            |..:|||..            ||.:..|        ||.|:.:.|                    
Zfish    57 PVTVADDVKEKIKLEVPKVKGQLLIFGATNWDLIGRKEVPKQQAAFRNLGQNLWGPHRYGCLSDV 121

  Fly   227 SVKSISSGHSERSVAANTRHLLHQGYALLHTQLFTFGASNNGLLGSGDHIRRANVMRLQKLDSMG 291
            .|..:.||    ..||::..:..:|      :|:::|.::.|.||.||..|......::.|....
Zfish   122 QVSCVVSG----PCAAHSLIITTEG------KLWSWGRNDKGQLGHGDTKRLEAPKLIEGLGEEV 176

  Fly   292 VCSIAAGLEHTVARTLDGRLYHWGLNNHSQLGED-----VSSPMEITITENTAALPIEQNSALEA 351
            :.:.|.|..||:|.|.:|.:|.:|.|...|||:.     |.||  .||..|  ..||     ::.
Zfish   177 IVAAACGRNHTLALTENGTVYTFGENKLGQLGQGNQTDAVLSP--ATIQYN--GQPI-----VKV 232

  Fly   352 TCGDYHTLLLNASGQIHS 369
            .||...:::::..|.::|
Zfish   233 ACGAEFSMIVDCKGNLYS 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 ATS1 <238..>367 CDD:444065 36/133 (27%)
PH-like 616..715 CDD:473070
COG4642 <745..890 CDD:443680
PLN03185 835..>962 CDD:215619
VPS9 1373..1479 CDD:460489
rcc2NP_998341.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..56
RCC1 1 76..138 12/65 (18%)
ATS1 126..474 CDD:444065 39/144 (27%)
RCC1 2 141..192 15/56 (27%)
RCC1 3 194..244 17/58 (29%)
RCC1 4 246..320 2/5 (40%)
Required for interaction with RAC1. /evidence=ECO:0000250|UniProtKB:Q9P258 291..298
RCC1 5 321..374
RCC1 6 376..420
RCC1 7 421..474
Blue background indicates that the domain is not in the aligned region.

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