DRSC/TRiP Functional Genomics Resources

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Protein Alignment Als2 and Sergef

DIOPT Version :10

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:XP_038956885.1 Gene:Sergef / 365243 RGDID:1563497 Length:481 Species:Rattus norvegicus


Alignment Length:119 Identity:39/119 - (32%)
Similarity:56/119 - (47%) Gaps:19/119 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 LFTFGASNNGLLGSGDHIRRANVMRLQKLD----SMGVCSIAAGLEHTVARTLDGRLYHWGLNNH 319
            ||.:||::.|.||.|   .:.:|:..|:|.    |..:.|:..|..|:|..|..|.|:..|||..
  Rat    17 LFAWGANSYGQLGLG---HKEDVLLPQQLSDFCKSGCIKSVTGGGGHSVVVTDGGGLFVCGLNKD 78

  Fly   320 SQLG----EDVSSPMEITITENTAALPIEQNSALEATCGDYHTLLLNASGQIHS 369
            .|||    |:|   :..||.:.....||.|     ..||...|::|...||:.|
  Rat    79 GQLGLGHTEEV---LRFTICKPLLGCPIRQ-----VACGWDFTIMLTEKGQVLS 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 ATS1 <238..>367 CDD:444065 37/115 (32%)
PH-like 616..715 CDD:473070
COG4642 <745..890 CDD:443680
PLN03185 835..>962 CDD:215619
VPS9 1373..1479 CDD:460489
SergefXP_038956885.1 ATS1 17..326 CDD:444065 39/119 (33%)
Blue background indicates that the domain is not in the aligned region.

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