DRSC/TRiP Functional Genomics Resources

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Protein Alignment Als2 and Rcc1l

DIOPT Version :10

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:NP_001101802.1 Gene:Rcc1l / 360796 RGDID:1307558 Length:461 Species:Rattus norvegicus


Alignment Length:407 Identity:92/407 - (22%)
Similarity:134/407 - (32%) Gaps:132/407 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DSALGGQEERESFTIYHEGRELQLHWRGLP-PLQRFPASRI----CSNAGGELLLLTTDHALYS- 65
            ||.||....|:..|   .|.|..|....:| ||.|...:::    |..|  ..|:||....::| 
  Rat   136 DSQLGFHRSRKDKT---RGYEYVLEPSPVPLPLDRPQETKVLQVSCGRA--HSLVLTDREGVFSM 195

  Fly    66 ---AKLQANREHMD------------LQLLRTDVVDMDFCSGSQELFVVLTNGSVQRQATGSGRD 115
               |..|..|:.::            :|.....||.: .|.....||:. ..|.|  .:.|.|.|
  Rat   196 GNNAHGQCGRKVVEDEVYSESHKVHRMQDFEGQVVQV-VCGQDHSLFLT-DKGEV--YSCGWGAD 256

  Fly   116 ----VGHPHAWQT---LGFDPLELHAEGVRIRRV-----CC---SAQGVVFVGASGETYVMGSCG 165
                :||.:...|   ||.|     ..||.:.:|     ||   ||.|.||              
  Rat   257 GQTGLGHYNITSTPSKLGGD-----LAGVTVVQVATYGDCCLALSADGGVF-------------- 302

  Fly   166 EVFKAEQQPRHMRLYEEGKELLDLAAGNEHFVMLVAPYNLADDALQLSVASAKEEPEDERASVKS 230
                                    ..||..::.|.:    ..|:.|::|....  |......||.
  Rat   303 ------------------------GWGNSEYLQLAS----VTDSTQVNVPRCL--PFSGVGKVKQ 337

  Fly   231 ISSGHSERSVAANTRHLLHQGYALLHTQLFTFGASNNGLLGSGDHIRRANVMRLQKLDSMG---- 291
            ::.|.:..::.....|:...||               |:||.|.::....:..:......|    
  Rat   338 VACGGTGCAILNEEGHVFVWGY---------------GILGKGPNLSETALPEMIPPTLFGLTEF 387

  Fly   292 -----VCSIAAGLEHTVARTLDGRLYHWGLNNHSQLG----EDVSSPMEITITENTAALPIEQNS 347
                 |..|..||.|..|.|..|.|:.||.|....||    ||...|..:|       :|.|   
  Rat   388 NPEVKVSQIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVT-------MPGE--- 442

  Fly   348 ALEATCGDYHTLLLNAS 364
            .::..||..|.:.|..|
  Rat   443 PVDVACGVDHMVTLAKS 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 ATS1 <238..>367 CDD:444065 33/140 (24%)
PH-like 616..715 CDD:473070
COG4642 <745..890 CDD:443680
PLN03185 835..>962 CDD:215619
VPS9 1373..1479 CDD:460489
Rcc1lNP_001101802.1 ATS1 52..434 CDD:444065 83/370 (22%)
Blue background indicates that the domain is not in the aligned region.

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