DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Als2 and CG33288

DIOPT Version :9

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:NP_996136.2 Gene:CG33288 / 2768968 FlyBaseID:FBgn0053288 Length:1115 Species:Drosophila melanogaster


Alignment Length:1315 Identity:251/1315 - (19%)
Similarity:405/1315 - (30%) Gaps:472/1315 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 ATGSGRDVGHPH-AWQTLGF-----DPLELHAEGVRIRRVCCSAQGVVFV--------------- 152
            |:|:...:|..| |..|..:     ||::....|.....|.|.: |.:||               
  Fly     5 ASGAIFTLGKSHLAENTQSYFYIKNDPVKRLISGPNQSAVICES-GRLFVWGENHYGQLGIGGHG 68

  Fly   153 GAS-----------GETYVMGSCGEVFKAEQQPRHMRLYEEGKELLDLAAGNEHFVMLVAPYNLA 206
            |||           |:.....:|.:..|.           .|.::.|:|.||...|||.      
  Fly    69 GASGKKGGGSHNGNGDIVTKPTCVKALKT-----------LGLKICDVAFGNHWAVMLT------ 116

  Fly   207 DDALQLSVASAKEEPEDERASVKSISSGHSERSVAANTRHLLHQGYALLHTQLFTFGASNNGLLG 271
             .:.::........|||...:....|:...::..|.                             
  Fly   117 -HSNEIFFTGRNIFPEDTHVAQHFTSAQVDQQPCAI----------------------------- 151

  Fly   272 SGDHIRRANVMRLQKLDSM--------GVCSIAAGLEHTVARTLDGRLYHWGLNNHSQLGE---D 325
                ||:.  .||::.|..        ...::.||.||....|..|||...|.|...||||   |
  Fly   152 ----IRKP--FRLEEFDDYLSKNEETDNFMTVQAGKEHFAVLTTTGRLIGCGSNAQLQLGELEAD 210

  Fly   326 VSS-PMEITITENTAALPIEQNSALEATCGDYHTLLLNASGQI----HSLQ-PAPPMRHLQQSST 384
            ... |:||.:.     .|::|     .|||...||:|.|:|.:    |..: ..|....||::..
  Fly   211 YDGHPVEIRLD-----APVQQ-----FTCGPESTLVLTATGNLFLTGHLNEFVFPRFTELQKNLP 265

  Fly   385 YAQTLLQLQLGAAWPRQLRLLMCSGGY-----TLQNQR-QFQRQYHY----------------YL 427
            ..:.::.:.:...  .::.::..:|..     :|:|:. .|||.|.|                :.
  Fly   266 PTEAIIFMHISKT--SEVYIVTNAGSIYRSFESLRNKSLVFQRFYDYDCEENGPIWKLLKGFSFY 328

  Fly   428 SHLQSQLQLLLKHRQAVQTLEIWQRQSALEPLSALGPLLINWERILCLLVATLHSL-EGFYRADF 491
            :.|....:......::...|:.::..|..:.|           |:|.:.|...|.| :|..|:..
  Fly   329 AVLSKANKFFTTFSESGHHLKTFREISKFKNL-----------RLLDIAVGDQHVLVQGIPRSSM 382

  Fly   492 --------------------VQPAD---------------LLFICHYKEYIDLFDGYTKAYCDVF 521
                                :||.|               |:.....:|..||....|..  ::.
  Fly   383 SSASVNGSAEPNRYVNRSFVLQPTDANGNKEDTRTHSGRSLIKQEGMEETEDLSMSTTVG--ELA 445

  Fly   522 SVNGFG-----EAVVAITGLSSPLAELNEESYVTRLFQQPFSIYQ---LFVQFMELLVRTQSEYG 578
            :..|.|     |||..:.....|    .|:|.:||        ||   ..::..:::.:      
  Fly   446 AAAGAGTAAAMEAVKHLINGEKP----EEKSDLTR--------YQDLNANIESADIIPK------ 492

  Fly   579 EHRVA--WSEFARHSCISQELAVN-TKDFWSSNDRNPRIVQFRGRHRRVILTSALVPLKLVTSGI 640
            ||:.|  ..|...:|.||::...| ..|..:..::|               .||....|.|.|..
  Fly   493 EHKEAKGSDEIGPNSNISEKEEDNQIADRVTPGNKN---------------ESAADQEKSVHSPN 542

  Fly   641 SRSSNSFILFSDFLCQVSGNSLYSYPLTTLWVWTEGDSLR-LTTPEKSFLVSTRSQEMRKVWLDQ 704
            :.:::..|..:|...::..::....|:.|  ..|:..||: :.:|     |.|:....:.:    
  Fly   543 TAATSEAIKTNDGYKEMKPSATIESPVIT--ADTKESSLKPIVSP-----VKTKRSPAKTI---- 596

  Fly   705 LQSSIIASLG-------------------KPLGSPVPSYRS--TGYEFSREHPKFSRVKACGTWR 748
             :|||.:|..                   .|..||..|.||  :.::.....||   .|..|: :
  Fly   597 -ESSIKSSSSPVKPTESMQKLPTPPTHTPTPPNSPTESLRSNKSAHDMELVDPK---PKVPGS-Q 656

  Fly   749 KGVLHGNCYLEYPDGS----------------VYCGELQHGIIEGFGKMV---------IPTTGL 788
            :.:|...  ..||:.|                .|...:.|..:|.....:         :||..:
  Fly   657 ETLLRPR--TPYPESSNSSTPQTIKKTPIRNFSYESAMDHDHLERTSPELVSSLDTVEEVPTAKI 719

  Fly   789 YVGN---------------------------FKGGRFHGHGV-----YEMHCKDSP-ESEVYEGN 820
            :|..                           ....||...||     .|....|:| ||.|.:  
  Fly   720 HVNTPTPPTEDDEHLAVEITTTKDSTDSSKVINEIRFINDGVDVTSRVEEQMPDTPLESSVED-- 782

  Fly   821 FCEGLFHGHGVMRNNRYIYVGEYQAN--------ARSGYGVIEDLVSGDKYMGMFADNKRSGIGS 877
                 ....|..:..|    ||.|.:        |.|..|  ||.:.       ..|:.|:.|.:
  Fly   783 -----LESDGEQKMQR----GEEQVDKIVTSSEEAVSKVG--EDAID-------VMDSTRNSIQT 829

  Fly   878 CITNRG----DYFE--------GSFSGDDLTGSGVAVFENDYYYEGELTLLGPNGRGEYYMPSGD 930
            .:.|..    |..|        |:....|..|..|                |..|:|.:.:.| |
  Fly   830 AVKNAANGARDAMEAVGERMATGARGAVDTVGGAV----------------GAAGKGAHRLAS-D 877

  Fly   931 ACG-----GSGAMGTGEFDDTCELIGNKMFGQLSGTWDTVRIQAGELVLNRRFPKYPSSLGRQVV 990
            |..     ||.||      ...|..|:......|.|.|:         :.|......|.:..:|:
  Fly   878 AMHAVEQVGSSAM------HAVEQAGSNAVKAASETKDS---------MGRAMDSVTSKISTEVL 927

  Fly   991 DHNRKWRSLFN---NFESDLANCTASTS--------SSGGNQSAGTLRKSSKPTLSTAQIWNCIA 1044
            .......|||.   ..|:|......||.        ..|..::..||..:.:...:||      :
  Fly   928 GAKENISSLFQIKAAREADPQTTPCSTPRGEDDLSFKEGAPKTTTTLGSNEEDERTTA------S 986

  Fly  1045 VYMSKQRAREGTKPGNYFNNILLSLPLPQKT-SSPL-AKARTTTSALS----KLQTEAASAL--- 1100
            |..:...|..|...||.|.        |..| ..|| |....:..|:.    .:|..|.|.:   
  Fly   987 VNSNHNSAGHGNGNGNIFE--------PSTTFEDPLDAVVERSKKAMQDDIRAMQLRANSHIQAV 1043

  Fly  1101 ------DFLGFPPRRIQSQEALNSK----------PGGLQRADSLISMGHNTSRDLDNSSLASFQ 1149
                  |..||..:.:......|.|          |.|          .||.:.:..||.|    
  Fly  1044 AQQKEEDAKGFVKQVMDRLSCRNEKAVRIEDELRPPAG----------SHNKNTNKVNSEL---- 1094

  Fly  1150 LDQSLMNSTVNGDES 1164
               ||.|...:||:|
  Fly  1095 ---SLTNGQAHGDQS 1106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 RCC1 258..304 CDD:278826 9/53 (17%)
RCC1_2 292..321 CDD:290274 10/28 (36%)
RCC1 308..361 CDD:278826 20/56 (36%)
PH-like 616..715 CDD:302622 19/118 (16%)
VPS9 1373..1479 CDD:280383
CG33288NP_996136.2 ATS1 5..>260 CDD:227511 68/318 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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