DRSC/TRiP Functional Genomics Resources

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Protein Alignment Als2 and Rccd1

DIOPT Version :10

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:NP_775621.2 Gene:Rccd1 / 269955 MGIID:2444156 Length:377 Species:Mus musculus


Alignment Length:336 Identity:78/336 - (23%)
Similarity:120/336 - (35%) Gaps:104/336 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 QATGSGRDVGHPHAWQTLGFDPLELHAEGVRIRRVCCSAQG---VVFVGASGETYVMGS------ 163
            ||.|||.  .|...     :.|..|||..    .:|..:.|   ...|...|...:.||      
Mouse    19 QALGSGN--SHHSV-----YSPEPLHASD----DICQVSAGWSYTALVTRGGRVELSGSVSGAAD 72

  Fly   164 -CGEVFKAEQQPRHMRLYEEGKELLDL---AAGNEHFVMLVAPYN-LADDAL--QLSVASAKEEP 221
             |.:|:.:|             |||.|   ..|:...|....|.: |..:.|  |..|:.||.:.
Mouse    73 GCRDVWASE-------------ELLVLLRNKGGSSTEVQAWVPGSALQGEPLWVQNLVSGAKGQG 124

  Fly   222 EDE----------------RASV-------KSISSGHSERSVAANTRHLLHQGYALLHT--QLFT 261
            |||                ||.|       :.::.....|.:.....|:|     ||..  |:|:
Mouse   125 EDEPSRESRMGTLPLLPCARAYVTPEPPFCQPLAPELRVRQLELGAEHVL-----LLCAAGQVFS 184

  Fly   262 FGASNNGLLGSGDHIRRANVMRLQKLDSMGVCSIAAGLEHTVARTLDGRLYHWGLNNHSQLG--- 323
            :||..:|.||.|..........|:.|..:.:..:|||..|:|..:..|.:|.||.|...||.   
Mouse   185 WGAGRHGQLGHGTLEAELEPRLLEALQGLRMAKVAAGGWHSVCLSETGDIYIWGWNESGQLALPT 249

  Fly   324 ----------EDVSSPMEITITENTAA--------------------LPIEQNSALEATCGDYHT 358
                      |:.:...|..:.|..|.                    ||: .:.|:.|:||..||
Mouse   250 RSGTENKAEREEATELNEDGLKEELAVADAGAPAHFIAIQPFPALLDLPL-GSDAVMASCGSRHT 313

  Fly   359 LLLNASGQIHS 369
            .::..:|::::
Mouse   314 AVVTRTGELYT 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 ATS1 <238..>367 CDD:444065 40/163 (25%)
PH-like 616..715 CDD:473070
COG4642 <745..890 CDD:443680
PLN03185 835..>962 CDD:215619
VPS9 1373..1479 CDD:460489
Rccd1NP_775621.2 Interaction with KDM8. /evidence=ECO:0000250|UniProtKB:A6NED2 1..172 39/176 (22%)
ATS1 <163..344 CDD:444065 40/168 (24%)
RCC1 2 179..230 15/50 (30%)
RCC1 3 232..289 11/56 (20%)
RCC1 4 319..372 1/6 (17%)
Blue background indicates that the domain is not in the aligned region.

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