DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Als2 and Rpgr

DIOPT Version :9

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:NP_001171421.1 Gene:Rpgr / 19893 MGIID:1344037 Length:1039 Species:Mus musculus


Alignment Length:738 Identity:152/738 - (20%)
Similarity:259/738 - (35%) Gaps:216/738 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 WQTLGFDPLELHAEGVRIRRVCCS-----AQGVVFVG---ASGETYVMGSCGEVFK------AEQ 172
            |.:.|.      .:.:|:.||..:     || :.|.|   |..|:.|..: |.||.      ||.
Mouse     7 WGSQGV------GQHLRLNRVAPAIFPKQAQ-IPFAGFGMAESESLVPDT-GAVFTFGKTKFAEN 63

  Fly   173 QPRHMRLYEEGKELLDLAAGNEHFVMLVAPYNL----ADDALQLSVASAKE----------EPED 223
            .|  .:.:.:....:.|:.|:||..::.....|    :::..||.:.|...          :|| 
Mouse    64 IP--SKFWFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLGLGSKAAIIKPTCIKALKPE- 125

  Fly   224 ERASVKSISSGHSERSVAANTRHLLHQGYALLHTQLFTFGASNNGLLGSGDHIRR---ANVMRLQ 285
               .||..:.|.:...|:.:|            ..::..|.:|.|.||.||...|   ..::...
Mouse   126 ---KVKLAACGRNHTLVSTDT------------GGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFT 175

  Fly   286 KLDSMGVCSIAAGLEHTVARTLDGRLYHWGLNNHSQLG-EDVSS---PMEITITENTAALPIEQN 346
            ..|:  :..::||...:.|.|.||:|:.||.|:..|:| ||.|:   |.|:|:.:     ||...
Mouse   176 PADT--IKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK-----PISWI 233

  Fly   347 SALEATCGDYHTLLLNASGQIHSL-QPAPPMRHLQQSSTYAQTLLQLQLGAAWPRQLRLLMCSGG 410
            |     ||.||:..:...|::::. :|......|...........|..||.  |.::..:.|.||
Mouse   234 S-----CGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRVLGI--PERVIQVACGGG 291

  Fly   411 YTL---------------------------QNQRQFQRQYHYYLSH---------LQSQLQLLL- 438
            :|:                           ...:..:|.....:.|         |.::|.||. 
Mouse   292 HTVVLTEKVVYAFGLGQFGQLGLGTFLFETSEPKIIERIKDQKICHISCGENHTALMTELGLLYT 356

  Fly   439 ----KHRQAVQTLEIWQRQSALEPLSALGPLLINWERILCLLVATLHSLEGFYRADFVQPADLLF 499
                :|.:....:|.:..|       ....|..|:.|....|:|    ..|.:...|..|.  |.
Mouse   357 FGDGRHGKLGLGMENFTNQ-------FFPTLCSNFLRFAVQLIA----CGGCHMLVFATPR--LG 408

  Fly   500 ICHYKEYIDLFDGYTKAYCDVFSVNGFGEAVVAITGLSSPLAELNEE------------------ 546
            .....::.|:::.|...  ..||:|...........||:.|.....|                  
Mouse   409 TIDEPKFEDVYEPYIST--GSFSINDLSPRSSLNRSLSARLRRRERERPPCSASMVGTLPPLEGT 471

  Fly   547 SYVTRLFQQPFS-IYQLFV---------QFMELLVRTQSEYGEHRVAWSEFARHSCISQELAVNT 601
            |..|..:..|.| .:.|.|         :.||.|   .|:|.|.::.......:|.     ||::
Mouse   472 SASTSAYFYPSSPPFHLSVNNYPEKSPSESMEPL---DSDYFEDKMNKDTETENSS-----AVDS 528

  Fly   602 KDFWSSNDRNPRIVQFRGRHRRVILTSALVPLKLVTSGISRSSNSFIL-FSDFLCQVSGNS---- 661
            ::|..:||               ||.        :|..::.|||..:| ||....|.:.::    
Mouse   529 ENFGETND---------------ILN--------MTHMMTTSSNEKLLDFSPIQKQQNQDTFEKV 570

  Fly   662 LYSYPLT---TLWVWTEGDSLRLTTPEKSFLVS----TRSQEMRKVW--------LDQLQSSIIA 711
            :.|.|.|   ..:.:.|...::..|..|.:|..    .|..|:.:.:        |||::...:.
Mouse   571 MESTPCTENEDSYEYEEMSKIKEVTVYKQYLAKGIYMIRPAEILEAFSDEEVGNGLDQVEEPRVF 635

  Fly   712 SLGKPLGSPVPSYRSTGYEFSRE 734
            :.||.|.|     :..|.|...|
Mouse   636 TDGKGLQS-----KQVGKESDEE 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 RCC1 258..304 CDD:278826 11/48 (23%)
RCC1_2 292..321 CDD:290274 10/28 (36%)
RCC1 308..361 CDD:278826 21/56 (38%)
PH-like 616..715 CDD:302622 22/118 (19%)
VPS9 1373..1479 CDD:280383
RpgrNP_001171421.1 RCC1_2 78..104 CDD:290274 5/25 (20%)
RCC1 93..139 CDD:278826 9/49 (18%)
RCC1 144..193 CDD:278826 11/50 (22%)
RCC1_2 180..209 CDD:290274 10/28 (36%)
RCC1 196..243 CDD:278826 21/56 (38%)
RCC1 246..296 CDD:278826 11/51 (22%)
RCC1 301..348 CDD:278826 2/46 (4%)
RCC1 352..398 CDD:278826 11/56 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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