DRSC/TRiP Functional Genomics Resources

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Protein Alignment Als2 and Rcbtb2

DIOPT Version :9

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:NP_001164165.1 Gene:Rcbtb2 / 105670 MGIID:1917200 Length:551 Species:Mus musculus


Alignment Length:401 Identity:82/401 - (20%)
Similarity:146/401 - (36%) Gaps:122/401 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 QEERESFTIYHE-GRELQLHWRGLPPLQ--RFPASRICSNAGGELLLLTTDHALYSAKLQANREH 74
            :||...|  |.| |:.:|.....|..|.  ::|...:||..                        
Mouse     2 EEEVPGF--YGESGKSVQATLSSLKMLDVGKWPIFSLCSEE------------------------ 40

  Fly    75 MDLQLLRTDVV------DMDFCSGSQELFVVLTNGSVQRQATGSGRDVGHPHAWQTLGFDPLELH 133
             :|||:|...|      ::.:.:.:.|:||:.||.|                  ..||...::..
Mouse    41 -ELQLIRQACVFGSAGNEVLYTTVNDEIFVLGTNCS------------------GCLGVGDIQST 86

  Fly   134 AEGVRI-----RRVCCSAQG----VVFVGASGETYVMGSCGEVFKAEQQ-----------PRHMR 178
            .|..|:     :::...:.|    :|.....||.:..|     ..|..|           |.|:.
Mouse    87 IEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVFTWG-----HNAYSQLGNGTTNHGLVPCHIS 146

  Fly   179 LYEEGKELLDLAAGNEHFVMLVAP-------YNLADDALQLSVASAKEEPEDERAS-------VK 229
            .....|:::::|.|:.|.::|.:.       ||   ::.|:...|...:|...|.:       |.
Mouse   147 TNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYN---NSGQVGSGSTANQPIPRRVTGCLQNKVVM 208

  Fly   230 SISSGHSERSVAANTRHLLHQGYALLHTQLFTFGASNNGLLGSGDHIRRANVMRLQKLDSMGVCS 294
            :|:.|........:|            .:::.:|.:.||.||.|....:....|:..|..:.|..
Mouse   209 NIACGQMCSMAVVDT------------GEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIRVQR 261

  Fly   295 IAAGLEHTVARTLDGRLYHWGLNNHSQLGEDVSSPMEITITENTAALP----IEQNSALE-ATCG 354
            :|.|..||:..|.:|::|.||.|::.|||         |..::..:.|    :|::..:| |.|.
Mouse   262 VACGYAHTLVLTDEGQIYAWGANSYGQLG---------TGNKSNQSYPTPVVVEKDRIIEIAACH 317

  Fly   355 DYHTLLLNASG 365
            ..||......|
Mouse   318 SAHTSAAKTQG 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 RCC1 258..304 CDD:278826 13/45 (29%)
RCC1_2 292..321 CDD:290274 11/28 (39%)
RCC1 308..361 CDD:278826 16/57 (28%)
PH-like 616..715 CDD:302622
VPS9 1373..1479 CDD:280383
Rcbtb2NP_001164165.1 RCC1 1. /evidence=ECO:0000255 64..115 12/68 (18%)
ATS1 <107..335 CDD:227511 54/251 (22%)
RCC1 2. /evidence=ECO:0000255 117..169 12/56 (21%)
RCC1 3. /evidence=ECO:0000255 171..222 9/53 (17%)
RCC1 4. /evidence=ECO:0000255 223..274 14/62 (23%)
RCC1 5. /evidence=ECO:0000255 276..326 16/58 (28%)
RCC1 6. /evidence=ECO:0000255 328..382 1/1 (100%)
BTB_POZ_RCBTB2_CHC1L 374..490 CDD:349663
BACK_RCBTB2 487..551 CDD:350604
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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