DRSC/TRiP Functional Genomics Resources

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Protein Alignment Als2 and rsph1

DIOPT Version :10

Sequence 1:NP_649347.1 Gene:Als2 / 40410 FlyBaseID:FBgn0037116 Length:1486 Species:Drosophila melanogaster
Sequence 2:XP_021334546.2 Gene:rsph1 / 100003444 ZFINID:ZDB-GENE-041008-22 Length:232 Species:Danio rerio


Alignment Length:241 Identity:58/241 - (24%)
Similarity:81/241 - (33%) Gaps:90/241 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   759 EYPDGSVYCGELQHGIIEGFGKMVIPTTGLYVGNFKGGRFHGHGVYEMHCKDSPESEVYEGNFCE 823
            ||.......|| :|    |.||.|:|....|.|.::.|:..|.|.|:.                 
Zfish    18 EYEGDRNEAGE-RH----GQGKAVLPNGDTYQGAYENGKRSGQGTYKF----------------- 60

  Fly   824 GLFHGHGVMRNNRYIYVGEYQANARSGYGVIEDLVSGDKYMGMFADNKRSGIGSCITNRGDYFEG 888
                      .|...|.||:..|.:.|.|... ...|.||.||:.|::|.|:             
Zfish    61 ----------KNGARYTGEWYMNLKHGEGTFY-YPDGSKYEGMWVDDQRQGL------------- 101

  Fly   889 SFSGDDLTGSGVAVFENDYYYEGELTLLGPNGRGEY-YMPSGDACGGSGAMGTGEFDDTCELIGN 952
                      ||..:.|...|:||......:|:|.| |..:|                       
Zfish   102 ----------GVYTYPNGDTYDGEWLHHQRHGQGAYTYHDTG----------------------- 133

  Fly   953 KMFGQLSGTWDTVRIQ-AGELV-LNRRFP-----KYPSSLGRQVVD 991
               .|..|||...::: ||||: ||.|:.     ..||..|:.|.|
Zfish   134 ---SQYVGTWIMGKMESAGELIYLNHRYQGNFINNNPSGPGKYVFD 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Als2NP_649347.1 ATS1 <238..>367 CDD:444065
PH-like 616..715 CDD:473070
COG4642 <745..890 CDD:443680 31/130 (24%)
PLN03185 835..>962 CDD:215619 28/127 (22%)
VPS9 1373..1479 CDD:460489
rsph1XP_021334546.2 None
Blue background indicates that the domain is not in the aligned region.

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