DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7166 and rig-4

DIOPT Version :9

Sequence 1:NP_001262181.1 Gene:CG7166 / 40401 FlyBaseID:FBgn0037107 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:480 Identity:106/480 - (22%)
Similarity:160/480 - (33%) Gaps:156/480 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 NDPPTTAPKFLSRGHL------YKVIVGETIELPCKVQNLGSFVLLWRKGSSVLTAGHLKITRDQ 90
            :|..:....|:||..|      .:..||.::.|.|.|:...|..:.|.|...::|....|:|.|:
 Worm   311 SDQKSAYMTFISRPILKDLPNEIQKTVGSSLSLKCSVKKKSSMDIKWYKNGLMMTTQRGKLTIDR 375

  Fly    91 RFKIVGDYNLQINGVKTQDAGDYICQ-------------LGDQENRDQVHT-------------- 128
                          :|..|.|.|.|:             :.:.|..:.|.|              
 Worm   376 --------------IKQDDFGLYQCEATNAAGADLASVWVKEGEANETVATEMSEDGMSLEEEIS 426

  Fly   129 -----------------VEILVPPTLRALPHNGQVTARKGSTVT-------LECKASGNPVPTIF 169
                             .|.|.|.|....|....:...|..||.       :||.|:|:|.|.|.
 Worm   427 METPPPRKLKFFDNSKSQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNII 491

  Fly   170 WFKKDVFSGPTHLSD-------SSTLILENVDRHHAGTYQCS-ADNGVKDRVSMDI---QLTILS 223
            |    :.:|....:|       :..|.:.::.:...|.|.|. :.:.||...::.:   .|....
 Worm   492 W----LLNGHEIQTDNVKYDLTNDGLAIHDIRKSDEGEYTCEISGSNVKATANVQVNGDSLIEYG 552

  Fly   224 PPEITVEKSWVHASEGYDVELVCIVHGDV--NSEMLWYQNSFLLDATDRRSM-YPRDDRYSLIIR 285
            |.:   :||.:    |.:||..|.|..:.  .:.:.||.|..||.......: ..|:.:.|||||
 Worm   553 PAD---QKSLI----GTNVEFSCEVAKEYVRKASVEWYLNDVLLPVNGNSGLRISRNRKGSLIIR 610

  Fly   286 NFQPTDFGNYSCVADNALGRTKKYIEVSGRPGPADFISPALSGFLDHYNLTWTIESIPPLDEIKL 350
            ...|.:.|.|.|           .:.|.||...|       |..|.      .||. |.:.|   
 Worm   611 QVGPDNTGEYRC-----------RVTVDGREENA-------SAMLQ------IIEK-PAMPE--- 647

  Fly   351 LYRRLLMNETYQHPGK----WHEYHIKPTPI-------RTDGSHFLMSYL--------------- 389
            ..|..|.|||.  |.|    |:|......||       ||.|...|.|..               
 Worm   648 RVRAELHNETM--PAKVRVRWNEGFDGNEPIIKHAIEMRTMGPTGLWSDWTTAIDNIPKEEGKPC 710

  Fly   390 ----VKNLEHNAVYEAIVQAKNKYG 410
                :::|..::..|..|.|.||:|
 Worm   711 CWTDIEDLRPSSTAEFRVVASNKHG 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7166NP_001262181.1 IG_like 50..133 CDD:214653 21/126 (17%)
Ig 56..116 CDD:143165 14/59 (24%)
IG_like 144..221 CDD:214653 20/94 (21%)
IGc2 151..209 CDD:197706 16/72 (22%)
IG_like 232..313 CDD:214653 21/83 (25%)
Ig 242..311 CDD:143165 19/71 (27%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 17/85 (20%)
IGc2 338..393 CDD:197706 16/68 (24%)
I-set 459..543 CDD:254352 19/87 (22%)
IGc2 478..534 CDD:197706 14/59 (24%)
IG_like 553..639 CDD:214653 29/116 (25%)
Ig 564..635 CDD:143165 23/88 (26%)
FN3 643..747 CDD:238020 25/98 (26%)
FN3 756..850 CDD:238020
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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